A B C D E F G H I J L M N O P R S T U V W X

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SHAPE_CUBOID - Static variable in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

SHAPE_CYLINDER - Static variable in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

SHAPE_SPHERE - Static variable in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

SIMULATION_HAULTED - Static variable in class uk.ac.ed.simulator_pdb.model.SimulatorModel

SIMULATION_PAUSED - Static variable in class uk.ac.ed.simulator_pdb.model.SimulatorModel

SIMULATION_PLAYING - Static variable in class uk.ac.ed.simulator_pdb.model.SimulatorModel

SIMULATION_RESET - Static variable in class uk.ac.ed.simulator_pdb.model.SimulatorModel

STATIC - Static variable in class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate

SULPHUR_COLOUR - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

SULPHUR_MASS - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

SULPHUR_RADIUS - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

SettingsController - class uk.ac.ed.simulator_pdb.SettingsController.

User: nix Date: May 5, 2004 Time: 2:08:19 PM To change this template use Options | File TemplateBuilderModel.

SettingsController(Model, SettingsView) - Constructor for class uk.ac.ed.simulator_pdb.SettingsController

Constructs a new SwingController

SettingsView - class uk.ac.ed.simulator_pdb.SettingsView.

User: nix Date: May 5, 2004 Time: 2:08:08 PM To change this template use Options | File TemplateBuilderModel.

SettingsView(Model) - Constructor for class uk.ac.ed.simulator_pdb.SettingsView

Constructs a new SwingView

SimBond - class uk.ac.ed.simulator_pdb.model.SimBond.

SimBond(SimBond) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBond

SimBond(SimBondTemplate) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBond

SimBond(SimBondSite) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBond

SimBond(SimBondTemplate, Vector3d, Quat4d) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBond

SimBondSite - class uk.ac.ed.simulator_pdb.model.SimBondSite.

User: nix Date: Jul 26, 2004 Time: 7:09:33 PM To change this template use Options | File TemplateBuilderModel.

SimBondSite(SimBondTemplate) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBondSite

SimBondSite(SimBondTemplate, Vector3d, Quat4d) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBondSite

SimBondTemplate - class uk.ac.ed.simulator_pdb.model.SimBondTemplate.

SimBondTemplate(String) - Constructor for class uk.ac.ed.simulator_pdb.model.SimBondTemplate

SimCluster - class uk.ac.ed.simulator_pdb.model.SimCluster.

User: nix Date: May 10, 2004 Time: 1:15:44 PM To change this template use Options | File TemplateBuilderModel.

SimCluster(SimObject) - Constructor for class uk.ac.ed.simulator_pdb.model.SimCluster

SimLandscapeTemplate - class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate.

SimLandscapeTemplate(String) - Constructor for class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate

SimObject - class uk.ac.ed.simulator_pdb.model.SimObject.

SimObject(SimObject) - Constructor for class uk.ac.ed.simulator_pdb.model.SimObject

SimObject(SimObjectTemplate, String) - Constructor for class uk.ac.ed.simulator_pdb.model.SimObject

SimObject(SimObjectTemplate, String, Vector3d, Matrix3d) - Constructor for class uk.ac.ed.simulator_pdb.model.SimObject

SimObjectTemplate - class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.

SimObjectTemplate(String) - Constructor for class uk.ac.ed.simulator_pdb.model.SimObjectTemplate

SimObjectTemplate.SimObjectTemplateAdapter - class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter.

SimObjectTemplate.SimObjectTemplateAdapter() - Constructor for class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

SimObjectTemplate.SimObjectTemplateEvent - class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateEvent.

SimObjectTemplate.SimObjectTemplateEvent(SimObjectTemplate, SimSubParticle) - Constructor for class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateEvent

SimObjectTemplate.SimObjectTemplateEvent(SimObjectTemplate, SimBondSite) - Constructor for class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateEvent

SimObjectTemplate.SimObjectTemplateListener - interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener.

SimParticle - class uk.ac.ed.simulator_pdb.model.SimParticle.

SimParticle(SimParticle) - Constructor for class uk.ac.ed.simulator_pdb.model.SimParticle

SimParticle(SimParticleTemplate) - Constructor for class uk.ac.ed.simulator_pdb.model.SimParticle

SimParticle(SimParticleTemplate, Vector3d, Quat4d) - Constructor for class uk.ac.ed.simulator_pdb.model.SimParticle

SimParticleTemplate - class uk.ac.ed.simulator_pdb.model.SimParticleTemplate.

SimParticleTemplate(String) - Constructor for class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

SimParticleTemplate.Shape - class uk.ac.ed.simulator_pdb.model.SimParticleTemplate.Shape.

SimParticleTemplate.Shape(String, float[]) - Constructor for class uk.ac.ed.simulator_pdb.model.SimParticleTemplate.Shape

SimRule - class uk.ac.ed.simulator_pdb.model.SimRule.

SimRule(SimRuleTemplate) - Constructor for class uk.ac.ed.simulator_pdb.model.SimRule

SimRuleTemplate - class uk.ac.ed.simulator_pdb.model.SimRuleTemplate.

SimRuleTemplate(String) - Constructor for class uk.ac.ed.simulator_pdb.model.SimRuleTemplate

SimRuleTemplate.Likelyhood - class uk.ac.ed.simulator_pdb.model.SimRuleTemplate.Likelyhood.

SimRuleTemplate.Likelyhood(double, double) - Constructor for class uk.ac.ed.simulator_pdb.model.SimRuleTemplate.Likelyhood

SimSubParticle - class uk.ac.ed.simulator_pdb.model.SimSubParticle.

User: nix Date: Jul 26, 2004 Time: 7:08:42 PM To change this template use Options | File TemplateBuilderModel.

SimSubParticle(SimParticleTemplate) - Constructor for class uk.ac.ed.simulator_pdb.model.SimSubParticle

SimSubParticle(SimParticleTemplate, Vector3d, Quat4d) - Constructor for class uk.ac.ed.simulator_pdb.model.SimSubParticle

SimulationJava3DController - class uk.ac.ed.simulator_pdb.SimulationJava3DController.

SimulationJava3DController(Model, Java3DView) - Constructor for class uk.ac.ed.simulator_pdb.SimulationJava3DController

SimulationJava3DController.BondPositions - class uk.ac.ed.simulator_pdb.SimulationJava3DController.BondPositions.

SimulationJava3DController.BondPositions() - Constructor for class uk.ac.ed.simulator_pdb.SimulationJava3DController.BondPositions

SimulationJava3DController.ParticlePositions - class uk.ac.ed.simulator_pdb.SimulationJava3DController.ParticlePositions.

SimulationJava3DController.ParticlePositions() - Constructor for class uk.ac.ed.simulator_pdb.SimulationJava3DController.ParticlePositions

SimulationJava3DView - class uk.ac.ed.simulator_pdb.SimulationJava3DView.

User: nix Date: May 6, 2004 Time: 4:50:51 PM To change this template use Options | File TemplateBuilderModel.

SimulationJava3DView(Model) - Constructor for class uk.ac.ed.simulator_pdb.SimulationJava3DView

SimulationToolbarController - class uk.ac.ed.simulator_pdb.SimulationToolbarController.

User: nix Date: May 4, 2004 Time: 10:57:45 AM To change this template use Options | File TemplateBuilderModel.

SimulationToolbarController(Model, Java3DModel, SimulationToolbarView) - Constructor for class uk.ac.ed.simulator_pdb.SimulationToolbarController

Constructs a new SwingController

SimulationToolbarView - class uk.ac.ed.simulator_pdb.SimulationToolbarView.

User: nix Date: May 4, 2004 Time: 10:57:36 AM To change this template use Options | File TemplateBuilderModel.

SimulationToolbarView(Model) - Constructor for class uk.ac.ed.simulator_pdb.SimulationToolbarView

SimulatorModel - class uk.ac.ed.simulator_pdb.model.SimulatorModel.

User: nix Date: Jun 30, 2004 Time: 4:57:52 PM To change this template use Options | File TemplateBuilderModel.

SimulatorModel(Model) - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel

SimulatorModel.SimulationAdapter - class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter.

SimulatorModel.SimulationAdapter() - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

SimulatorModel.SimulationEvent - class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent.

SimulatorModel.SimulationEvent(Object, int) - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent

SimulatorModel.SimulationEvent(Object, long, long) - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent

SimulatorModel.SimulationEvent(Object, double, double) - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent

SimulatorModel.SimulationEvent(Object, SimCluster) - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent

SimulatorModel.SimulationEvent(Object, SimCluster, Matrix4d) - Constructor for class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent

SimulatorModel.SimulationListener - interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener.

SwingController - class uk.ac.ed.simulator_pdb.SwingController.

User: nix Date: May 4, 2004 Time: 10:55:05 AM To change this template use Options | File TemplateBuilderModel.

SwingController(Model, SwingView) - Constructor for class uk.ac.ed.simulator_pdb.SwingController

Constructs a new SwingController

SwingView - class uk.ac.ed.simulator_pdb.SwingView.

SwingView(Model) - Constructor for class uk.ac.ed.simulator_pdb.SwingView

saveInstanceFile(InstanceFile) - Method in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

saveTemplateFile(TemplateFile) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

scale - Variable in class uk.ac.ed.simulator_pdb.Java3DView

scaleChanged(InstanceFile.InstanceFileEvent) - Method in class uk.ac.ed.simulator_pdb.model.InstanceFile.InstanceFileAdapter

scaleChanged(InstanceFile.InstanceFileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.InstanceFile.InstanceFileListener

scaleChanged(PDBFile.PDBEvent) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.PDBAdapter

scaleChanged(PDBFile.PDBEvent) - Method in interface uk.ac.ed.simulator_pdb.model.PDBFile.PDBListener

scaleChanged(TemplateFile.TemplateFileEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter

scaleChanged(TemplateFile.TemplateFileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener

select(Object) - Method in class uk.ac.ed.simulator_pdb.TreeView

selectFileToOpen() - Static method in class uk.ac.ed.simulator_pdb.View

selectFileToSave() - Static method in class uk.ac.ed.simulator_pdb.View

selectInstanceFile(InstanceBuilderModel) - Static method in class uk.ac.ed.simulator_pdb.View

selectSimBondTemplate(TemplateFile) - Static method in class uk.ac.ed.simulator_pdb.View

selectSimObjectTemplate(TemplateBuilderModel) - Static method in class uk.ac.ed.simulator_pdb.View

selectSimObjectTemplate(TemplateFile) - Static method in class uk.ac.ed.simulator_pdb.View

selectSimParticleTemplate(TemplateFile) - Static method in class uk.ac.ed.simulator_pdb.View

selectSimRuleTemplate(TemplateFile) - Static method in class uk.ac.ed.simulator_pdb.View

selectTemplateFile(TemplateBuilderModel) - Static method in class uk.ac.ed.simulator_pdb.View

selectedObjectChanged(InstanceBuilderModel.SelectedObjectEvent) - Method in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectAdapter

selectedObjectChanged(InstanceBuilderModel.SelectedObjectEvent) - Method in interface uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectListener

selectedObjectChanged(TemplateBuilderModel.SelectedObjectEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectAdapter

selectedObjectChanged(TemplateBuilderModel.SelectedObjectEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectListener

selectedObjectTransformed(InstanceBuilderModel.SelectedObjectEvent) - Method in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectAdapter

selectedObjectTransformed(InstanceBuilderModel.SelectedObjectEvent) - Method in interface uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectListener

selectedObjectTransformed(TemplateBuilderModel.SelectedObjectEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectAdapter

selectedObjectTransformed(TemplateBuilderModel.SelectedObjectEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectListener

selected_object - Variable in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

selected_object - Variable in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

selected_object_listener - Variable in class uk.ac.ed.simulator_pdb.InstanceJava3DView

selected_object_listener - Variable in class uk.ac.ed.simulator_pdb.TemplateJava3DView

selection_listeners - Variable in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

selection_listeners - Variable in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

setAlpha(float) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setBond(SimBond) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

setBondedAlpha(float) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setBondedColour(Color3f) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setCentreOfMass(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

setCluster(SimCluster) - Method in class uk.ac.ed.simulator_pdb.model.SimObject

setClustered(boolean) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile

setCollide(boolean) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setColour(Color3f) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setCurrentBondIdNum(int) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setCurrentObjectIdNum(int) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setCurrentParticleIdNum(int) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setCurrentRuleIdNum(int) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setDimensions(float[]) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate.Shape

setDisplacment(double) - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

setEnergy(double) - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

setFile(File) - Method in class uk.ac.ed.simulator_pdb.model.InstanceFile

setFile(File) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setFrameDelay(long) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

setId(String) - Method in class uk.ac.ed.simulator_pdb.model.InstanceFileObject

setId(String) - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

setId(String) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFileObject

setInstanceFile(InstanceFile) - Method in class uk.ac.ed.simulator_pdb.model.InstanceFileObject

setInstanceFile(InstanceFile) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

setLandscape(SimLandscapeTemplate) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile

setLandscape(SimLandscapeTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setMass(double) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.AminoAcid

setMass(double) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.Cluster

setMass(double) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setModified(boolean) - Method in class uk.ac.ed.simulator_pdb.model.InstanceFile

setModified(boolean) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setName(String) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate.Shape

setNumberOfClusters(int) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile

setObject(TemplateFile) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(PDBFile) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimObjectTemplate) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimSubParticle) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimBondSite) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimParticleTemplate) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimBondTemplate) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimRuleTemplate) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(InstanceFile) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimObject) - Method in class uk.ac.ed.simulator_pdb.PropertiesView

setObject(SimObject) - Method in class uk.ac.ed.simulator_pdb.model.SimBond

setObject(SimObject) - Method in class uk.ac.ed.simulator_pdb.model.SimParticle

setOrientation(Quat4d) - Method in class uk.ac.ed.simulator_pdb.model.SimBondSite

setOrientation(Matrix3d) - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

setOrientation(Quat4d) - Method in class uk.ac.ed.simulator_pdb.model.SimSubParticle

setParent(SimObjectTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimBondSite

setParent(SimObjectTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimSubParticle

setPosition(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.AminoAcid

setPosition(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.Cluster

setPosition(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.SimBondSite

setPosition(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.SimSubParticle

setPositionRelativeToCOM(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.SimSubParticle

setRadius(float) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.AminoAcid

setRadius(float) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.Cluster

setRule(int, String[]) - Method in class uk.ac.ed.simulator_pdb.model.SimRuleTemplate

setScale(float) - Method in class uk.ac.ed.simulator_pdb.Java3DView

setScale(double) - Method in class uk.ac.ed.simulator_pdb.Java3DView

setScale(double) - Method in class uk.ac.ed.simulator_pdb.model.InstanceFile

setScale(double) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile

setScale(double) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

setSelectedObject(Object) - Method in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

setSelectedObject(Object) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

setShape(String, float[]) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setShapeDimensions(float[]) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setShapeName(String) - Method in class uk.ac.ed.simulator_pdb.model.SimParticleTemplate

setState(int) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

setTemplate(SimBondTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimBond

setTemplate(SimBondTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimBondSite

setTemplate(SimObjectTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimObject

setTemplate(SimParticleTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimParticle

setTemplate(SimRuleTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

setTemplate(SimParticleTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimSubParticle

setTemplateFile(TemplateFile) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFileObject

setTimeUnit(double) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

setTimeValue(double) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

setTransformationMatrix(Matrix4d) - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

setTransformationMatrix(Matrix4d) - Method in class uk.ac.ed.simulator_pdb.model.SimObject

setTransformationMatrix(Matrix4d) - Method in class uk.ac.ed.simulator_pdb.model.SimParticle

setTransformationMatrix(SimCluster, Matrix4d) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

setType(int) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile

setType(int) - Method in class uk.ac.ed.simulator_pdb.model.SimRuleTemplate

setType(String) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

shape - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

shouldBreakBond(double) - Method in class uk.ac.ed.simulator_pdb.model.SimBond

showDialog() - Method in class uk.ac.ed.simulator_pdb.View.ChooserDialog

simObjTempListener - Variable in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

sim_instance_file_ext - Static variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.NeuroMLHandler

sim_template_file_ext - Static variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.NeuroMLHandler

simualtionFrameDelayChanged(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

simualtionFrameDelayChanged(SimulatorModel.SimulationEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener

simualtionSizeChanged(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

simualtionStateChanged(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

simualtionStateChanged(SimulatorModel.SimulationEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener

simualtionTimeStepChanged(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

simualtionTimeStepChanged(SimulatorModel.SimulationEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener

simulationSize - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLParams

split(char, String) - Static method in class uk.ac.ed.simulator_pdb.model.neuroml_handler.NeuroMLHandler

splitClusterAt(SimBond, SimBond) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

subParticleAdded(SimObjectTemplate.SimObjectTemplateEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

subParticleAdded(SimObjectTemplate.SimObjectTemplateEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener

subParticleMoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

subParticleMoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener

subParticleRemoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

subParticleRemoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener

sub_particles - Variable in class uk.ac.ed.simulator_pdb.model.PDBFile