Hierarchy For All Packages

Package Hierarchies:

uk.ac.ed.simulator_pdb, uk.ac.ed.simulator_pdb.model, uk.ac.ed.simulator_pdb.model.neuroml_handler, uk.ac.ed.simulator_pdb.model.pdb_handler

Class Hierarchy

• class java.lang.Object
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Container
      • class javax.swing.JComponent (implements java.io.Serializable)
        • class javax.swing.JPanel (implements javax.accessibility.Accessible)
          • class uk.ac.ed.simulator_pdb.InstanceToolbarView
          • class uk.ac.ed.simulator_pdb.Java3DView
            • class uk.ac.ed.simulator_pdb.InstanceJava3DView
            • class uk.ac.ed.simulator_pdb.SimulationJava3DView
            • class uk.ac.ed.simulator_pdb.TemplateJava3DView
          • class uk.ac.ed.simulator_pdb.PropertiesView
            • class uk.ac.ed.simulator_pdb.InstancePropertiesView
            • class uk.ac.ed.simulator_pdb.TemplatePropertiesView
          • class uk.ac.ed.simulator_pdb.SimulationToolbarView
          • class uk.ac.ed.simulator_pdb.TemplateToolbarView
          • class uk.ac.ed.simulator_pdb.TreeView
            • class uk.ac.ed.simulator_pdb.InstanceTreeView
            • class uk.ac.ed.simulator_pdb.TemplateTreeView
        • class uk.ac.ed.simulator_pdb.View.ChooserDialog
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class uk.ac.ed.simulator_pdb.SettingsView
          • class uk.ac.ed.simulator_pdb.SwingView
  • class uk.ac.ed.simulator_pdb.model.Constants
  • class uk.ac.ed.simulator_pdb.Controller
  • class java.util.EventObject (implements java.io.Serializable)
    • class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.FileEvent
    • class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectEvent
    • class uk.ac.ed.simulator_pdb.model.InstanceFile.InstanceFileEvent
    • class uk.ac.ed.simulator_pdb.model.InstanceFileObject.InstanceFileObjectEvent
    • class uk.ac.ed.simulator_pdb.model.PDBFile.PDBEvent
    • class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateEvent
    • class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationEvent
    • class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileEvent
    • class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectEvent
    • class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileEvent
    • class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectEvent
  • class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel
  • class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.FileAdapter (implements uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.FileListener)
  • class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectAdapter (implements uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectListener)
  • class uk.ac.ed.simulator_pdb.model.InstanceFile
  • class uk.ac.ed.simulator_pdb.model.InstanceFile.InstanceFileAdapter (implements uk.ac.ed.simulator_pdb.model.InstanceFile.InstanceFileListener)
  • class uk.ac.ed.simulator_pdb.model.InstanceFileObject
    • class uk.ac.ed.simulator_pdb.model.SimObject
  • class uk.ac.ed.simulator_pdb.model.InstanceFileObject.InstanceFileObjectAdapter (implements uk.ac.ed.simulator_pdb.model.InstanceFileObject.InstanceFileObjectListener)
  • class uk.ac.ed.simulator_pdb.InstanceToolbarController
  • class uk.ac.ed.simulator_pdb.Java3DController
    • class uk.ac.ed.simulator_pdb.InstanceJava3DController
    • class uk.ac.ed.simulator_pdb.SimulationJava3DController
    • class uk.ac.ed.simulator_pdb.TemplateJava3DController
  • class uk.ac.ed.simulator_pdb.Main
  • class uk.ac.ed.simulator_pdb.model.Model
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.NeuroMLHandler
  • class uk.ac.ed.simulator_pdb.model.PDBFile
  • class uk.ac.ed.simulator_pdb.model.PDBFile.AminoAcid (implements uk.ac.ed.simulator_pdb.model.PDBFile.DataPoint)
  • class uk.ac.ed.simulator_pdb.model.PDBFile.Atom (implements uk.ac.ed.simulator_pdb.model.PDBFile.DataPoint)
  • class uk.ac.ed.simulator_pdb.model.PDBFile.Cluster
  • class uk.ac.ed.simulator_pdb.model.PDBFile.PDBAdapter (implements uk.ac.ed.simulator_pdb.model.PDBFile.PDBListener)
  • class uk.ac.ed.simulator_pdb.model.pdb_handler.PDBHandler
  • class uk.ac.ed.simulator_pdb.PropertiesController
    • class uk.ac.ed.simulator_pdb.InstancePropertiesController
    • class uk.ac.ed.simulator_pdb.TemplatePropertiesController
  • class uk.ac.ed.simulator_pdb.SettingsController
  • class uk.ac.ed.simulator_pdb.model.SimBond
  • class uk.ac.ed.simulator_pdb.model.SimBondSite
  • class uk.ac.ed.simulator_pdb.model.SimCluster
  • class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter (implements uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener)
  • class uk.ac.ed.simulator_pdb.model.SimParticle
  • class uk.ac.ed.simulator_pdb.model.SimParticleTemplate.Shape
  • class uk.ac.ed.simulator_pdb.model.SimRule
  • class uk.ac.ed.simulator_pdb.model.SimRuleTemplate.Likelyhood
  • class uk.ac.ed.simulator_pdb.model.SimSubParticle
  • class uk.ac.ed.simulator_pdb.SimulationJava3DController.BondPositions
  • class uk.ac.ed.simulator_pdb.SimulationJava3DController.ParticlePositions
  • class uk.ac.ed.simulator_pdb.SimulationToolbarController
  • class uk.ac.ed.simulator_pdb.model.SimulatorModel
  • class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter (implements uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener)
  • class uk.ac.ed.simulator_pdb.SwingController
  • class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel
  • class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileAdapter (implements uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileListener)
  • class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectAdapter (implements uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectListener)
  • class uk.ac.ed.simulator_pdb.model.TemplateFile
  • class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter (implements uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener)
  • class uk.ac.ed.simulator_pdb.model.TemplateFileObject
    • class uk.ac.ed.simulator_pdb.model.SimBondTemplate
    • class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate
    • class uk.ac.ed.simulator_pdb.model.SimObjectTemplate
    • class uk.ac.ed.simulator_pdb.model.SimParticleTemplate
    • class uk.ac.ed.simulator_pdb.model.SimRuleTemplate
  • class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectAdapter (implements uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectListener)
  • class uk.ac.ed.simulator_pdb.TemplateToolbarController
  • class uk.ac.ed.simulator_pdb.TreeController
    • class uk.ac.ed.simulator_pdb.InstanceTreeController
    • class uk.ac.ed.simulator_pdb.TemplateTreeController
  • class uk.ac.ed.simulator_pdb.View
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLList
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLParams
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimBondTemplate
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimLandscapeTemplate
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate
  • class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimRuleTemplate

Interface Hierarchy

• interface uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.FileListener
• interface uk.ac.ed.simulator_pdb.model.InstanceBuilderModel.SelectedObjectListener
• interface uk.ac.ed.simulator_pdb.model.InstanceFile.InstanceFileListener
• interface uk.ac.ed.simulator_pdb.model.InstanceFileObject.InstanceFileObjectListener
• interface uk.ac.ed.simulator_pdb.model.PDBFile.DataPoint
• interface uk.ac.ed.simulator_pdb.model.PDBFile.PDBListener
• interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener
• interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener
• interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileListener
• interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectListener
• interface uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener
• interface uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectListener