A B C D E F G H I J L M N O P R S T U V W X

O

OBJECT_NAME - Static variable in class uk.ac.ed.simulator_pdb.model.TemplateFile

OXYGEN_COLOUR - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

OXYGEN_MASS - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

OXYGEN_RADIUS - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

object_template_listener - Variable in class uk.ac.ed.simulator_pdb.TemplateJava3DView

object_template_listener - Variable in class uk.ac.ed.simulator_pdb.TemplateTreeView

objects_instances - Variable in class uk.ac.ed.simulator_pdb.TreeView

openFile(File) - Method in class uk.ac.ed.simulator_pdb.model.Model

openInstanceFile(File) - Method in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

openPDBFile(File) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

openTemplateFile(File) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

orientateForBonding(Matrix4d, Matrix4d, double) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController

orientationAngle - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

orientationX - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

orientationY - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

orientationZ - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject