A B C D E F G H I J L M N O P R S T U V W X

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TemplateBuilderModel - class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.

User: nix Date: Jun 30, 2004 Time: 4:54:31 PM To change this template use Options | File TemplateBuilderModel.

TemplateBuilderModel(Model) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

TemplateBuilderModel.FileAdapter - class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileAdapter.

TemplateBuilderModel.FileAdapter() - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileAdapter

TemplateBuilderModel.FileEvent - class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileEvent.

TemplateBuilderModel.FileEvent(Object, PDBFile) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileEvent

TemplateBuilderModel.FileEvent(Object, TemplateFile) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileEvent

TemplateBuilderModel.FileListener - interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileListener.

TemplateBuilderModel.SelectedObjectAdapter - class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectAdapter.

TemplateBuilderModel.SelectedObjectAdapter() - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectAdapter

TemplateBuilderModel.SelectedObjectEvent - class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectEvent.

TemplateBuilderModel.SelectedObjectEvent(Object, Object, Object) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectEvent

TemplateBuilderModel.SelectedObjectEvent(Object, Matrix4d) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectEvent

TemplateBuilderModel.SelectedObjectListener - interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.SelectedObjectListener.

TemplateFile - class uk.ac.ed.simulator_pdb.model.TemplateFile.

User: nix Date: 17-Aug-2004 Time: 16:59:11 To change this template_file_object use Options | File TemplateBuilderModel.

TemplateFile(File) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFile

TemplateFile() - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFile

TemplateFile.TemplateFileAdapter - class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter.

TemplateFile.TemplateFileAdapter() - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter

TemplateFile.TemplateFileEvent - class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileEvent.

TemplateFile.TemplateFileEvent(Object, TemplateFileObject) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileEvent

TemplateFile.TemplateFileEvent(Object, double) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileEvent

TemplateFile.TemplateFileListener - interface uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener.

TemplateFileObject - class uk.ac.ed.simulator_pdb.model.TemplateFileObject.

User: nix Date: Jun 29, 2004 Time: 2:53:37 PM To change this template_file_object use Options | File TemplateBuilderModel.

TemplateFileObject(String) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFileObject

TemplateFileObject.TemplateFileObjectAdapter - class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectAdapter.

TemplateFileObject.TemplateFileObjectAdapter() - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectAdapter

TemplateFileObject.TemplateFileObjectEvent - class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectEvent.

TemplateFileObject.TemplateFileObjectEvent(TemplateFileObject) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectEvent

TemplateFileObject.TemplateFileObjectEvent(TemplateFileObject, String, String) - Constructor for class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectEvent

TemplateFileObject.TemplateFileObjectListener - interface uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectListener.

TemplateJava3DController - class uk.ac.ed.simulator_pdb.TemplateJava3DController.

User: nix Date: May 20, 2004 Time: 10:47:56 AM To change this template use Options | File TemplateBuilderModel.

TemplateJava3DController(Model, Java3DView) - Constructor for class uk.ac.ed.simulator_pdb.TemplateJava3DController

TemplateJava3DView - class uk.ac.ed.simulator_pdb.TemplateJava3DView.

User: nix Date: May 20, 2004 Time: 10:47:44 AM To change this template use Options | File TemplateBuilderModel.

TemplateJava3DView(Model) - Constructor for class uk.ac.ed.simulator_pdb.TemplateJava3DView

TemplatePropertiesController - class uk.ac.ed.simulator_pdb.TemplatePropertiesController.

User: nix Date: Jul 9, 2004 Time: 2:09:51 PM To change this template use Options | File TemplateBuilderModel.

TemplatePropertiesController(Model, PropertiesView) - Constructor for class uk.ac.ed.simulator_pdb.TemplatePropertiesController

TemplatePropertiesView - class uk.ac.ed.simulator_pdb.TemplatePropertiesView.

User: nix Date: Jul 9, 2004 Time: 2:09:30 PM To change this template use Options | File TemplateBuilderModel.

TemplatePropertiesView(Model) - Constructor for class uk.ac.ed.simulator_pdb.TemplatePropertiesView

TemplateToolbarController - class uk.ac.ed.simulator_pdb.TemplateToolbarController.

Created by IntelliJ IDEA.

TemplateToolbarController(Model, Java3DModel, TemplateToolbarView) - Constructor for class uk.ac.ed.simulator_pdb.TemplateToolbarController

Constructs a new TemplateToolbarController

TemplateToolbarView - class uk.ac.ed.simulator_pdb.TemplateToolbarView.

Created by IntelliJ IDEA.

TemplateToolbarView(Model) - Constructor for class uk.ac.ed.simulator_pdb.TemplateToolbarView

TemplateTreeController - class uk.ac.ed.simulator_pdb.TemplateTreeController.

User: nix Date: Jun 29, 2004 Time: 5:21:58 PM To change this template use Options | File TemplateBuilderModel.

TemplateTreeController(Model, TemplateTreeView) - Constructor for class uk.ac.ed.simulator_pdb.TemplateTreeController

Constructs a new SwingController

TemplateTreeView - class uk.ac.ed.simulator_pdb.TemplateTreeView.

Created by IntelliJ IDEA.

TemplateTreeView(Model) - Constructor for class uk.ac.ed.simulator_pdb.TemplateTreeView

TreeController - class uk.ac.ed.simulator_pdb.TreeController.

User: nix Date: Jul 7, 2004 Time: 2:02:59 PM To change this template use Options | File TemplateBuilderModel.

TreeController() - Constructor for class uk.ac.ed.simulator_pdb.TreeController

TreeView - class uk.ac.ed.simulator_pdb.TreeView.

User: nix Date: Jul 6, 2004 Time: 6:49:50 PM To change this template use Options | File TemplateBuilderModel.

TreeView(Model) - Constructor for class uk.ac.ed.simulator_pdb.TreeView

templateAdded(PDBFile.PDBEvent) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.PDBAdapter

templateAdded(PDBFile.PDBEvent) - Method in interface uk.ac.ed.simulator_pdb.model.PDBFile.PDBListener

templateAdded(TemplateFile.TemplateFileEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter

templateAdded(TemplateFile.TemplateFileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener

templateFileAdded(TemplateBuilderModel.FileEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileAdapter

templateFileAdded(TemplateBuilderModel.FileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileListener

templateFileRemoved(TemplateBuilderModel.FileEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileAdapter

templateFileRemoved(TemplateBuilderModel.FileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateBuilderModel.FileListener

templateId - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

templateRemoved(PDBFile.PDBEvent) - Method in class uk.ac.ed.simulator_pdb.model.PDBFile.PDBAdapter

templateRemoved(PDBFile.PDBEvent) - Method in interface uk.ac.ed.simulator_pdb.model.PDBFile.PDBListener

templateRemoved(TemplateFile.TemplateFileEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter

templateRemoved(TemplateFile.TemplateFileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener

templateTransformed(TemplateFile.TemplateFileEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileAdapter

templateTransformed(TemplateFile.TemplateFileEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateFile.TemplateFileListener

template_file_listener - Variable in class uk.ac.ed.simulator_pdb.TemplateJava3DView

template_hashmap - Variable in class uk.ac.ed.simulator_pdb.model.PDBFile

template_listener - Variable in class uk.ac.ed.simulator_pdb.TemplateJava3DView

template_listener - Variable in class uk.ac.ed.simulator_pdb.TemplateTreeView

test(SimBond, SimBond, double) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

testBondChanges(SimBond, ArrayList, ArrayList) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController

testCondition(String, SimBond, SimBond) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

testPosition(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

testPositionWalled(Vector3d) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

time - Variable in class uk.ac.ed.simulator_pdb.model.SimRuleTemplate.Likelyhood

times - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimRuleTemplate

toString() - Method in class uk.ac.ed.simulator_pdb.model.InstanceFile

toString() - Method in class uk.ac.ed.simulator_pdb.model.InstanceFileObject

toString() - Method in class uk.ac.ed.simulator_pdb.model.PDBFile

toString() - Method in class uk.ac.ed.simulator_pdb.model.SimBondSite

toString() - Method in class uk.ac.ed.simulator_pdb.model.SimCluster

toString() - Method in class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate

toString() - Method in class uk.ac.ed.simulator_pdb.model.SimRuleTemplate.Likelyhood

toString() - Method in class uk.ac.ed.simulator_pdb.model.SimSubParticle

toString() - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

toString() - Method in class uk.ac.ed.simulator_pdb.model.TemplateFileObject

toVector() - Method in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLList

transformSelectedInstance(Matrix4d) - Method in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

transformSelectedTemplate(Matrix4d) - Method in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

tree - Variable in class uk.ac.ed.simulator_pdb.TreeView

tree_model - Variable in class uk.ac.ed.simulator_pdb.TreeView

tree_scrollpane - Variable in class uk.ac.ed.simulator_pdb.TreeView

type - Variable in class uk.ac.ed.simulator_pdb.model.PDBFile

type - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimLandscapeTemplate