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PARTICLE_NAME
- Static variable in class uk.ac.ed.simulator_pdb.model.
TemplateFile
PDBFile
- class uk.ac.ed.simulator_pdb.model.
PDBFile
.
User: nix Date: 17-Aug-2004 Time: 13:30:58 To change this template_file_object use Options | File TemplateBuilderModel.
PDBFile(File)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile
PDBFile.AminoAcid
- class uk.ac.ed.simulator_pdb.model.
PDBFile.AminoAcid
.
PDBFile.AminoAcid(int)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.AminoAcid
PDBFile.Atom
- class uk.ac.ed.simulator_pdb.model.
PDBFile.Atom
.
PDBFile.Atom(SimParticleTemplate, Vector3d)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.Atom
PDBFile.Cluster
- class uk.ac.ed.simulator_pdb.model.
PDBFile.Cluster
.
PDBFile.Cluster(Vector3d, double, float)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.Cluster
PDBFile.DataPoint
- interface uk.ac.ed.simulator_pdb.model.
PDBFile.DataPoint
.
PDBFile.PDBAdapter
- class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBAdapter
.
PDBFile.PDBAdapter()
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBAdapter
PDBFile.PDBEvent
- class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBEvent
.
PDBFile.PDBEvent(Object, double)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBEvent
PDBFile.PDBEvent(Object, PDBFile)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBEvent
PDBFile.PDBEvent(Object, TemplateFileObject)
- Constructor for class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBEvent
PDBFile.PDBListener
- interface uk.ac.ed.simulator_pdb.model.
PDBFile.PDBListener
.
PDBHandler
- class uk.ac.ed.simulator_pdb.model.pdb_handler.
PDBHandler
.
PDBHandler()
- Constructor for class uk.ac.ed.simulator_pdb.model.pdb_handler.
PDBHandler
PROBABILITY_OF_BOND_UPDATE
- Static variable in class uk.ac.ed.simulator_pdb.
SimulationJava3DController
PropertiesController
- class uk.ac.ed.simulator_pdb.
PropertiesController
.
User: nix Date: 05-Apr-2004 Time: 16:37:04 To change this template use Options | File TemplateBuilderModel.
PropertiesController(Model, PropertiesView)
- Constructor for class uk.ac.ed.simulator_pdb.
PropertiesController
Constructs a new SwingController
PropertiesView
- class uk.ac.ed.simulator_pdb.
PropertiesView
.
User: nix Date: 05-Apr-2004 Time: 15:50:02 To change this template use Options | File TemplateBuilderModel.
PropertiesView(Model)
- Constructor for class uk.ac.ed.simulator_pdb.
PropertiesView
parent
- Variable in class uk.ac.ed.simulator_pdb.model.
InstanceFileObject
particleTemplateCoordX
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateCoordY
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateCoordZ
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateIds
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateOrientAngle
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateOrientX
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateOrientY
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
particleTemplateOrientZ
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimObjectTemplate
pdbFileAdded(TemplateBuilderModel.FileEvent)
- Method in class uk.ac.ed.simulator_pdb.model.
TemplateBuilderModel.FileAdapter
pdbFileAdded(TemplateBuilderModel.FileEvent)
- Method in interface uk.ac.ed.simulator_pdb.model.
TemplateBuilderModel.FileListener
pdbFileChanged(PDBFile.PDBEvent)
- Method in class uk.ac.ed.simulator_pdb.model.
PDBFile.PDBAdapter
pdbFileChanged(PDBFile.PDBEvent)
- Method in interface uk.ac.ed.simulator_pdb.model.
PDBFile.PDBListener
pdbFileRemoved(TemplateBuilderModel.FileEvent)
- Method in class uk.ac.ed.simulator_pdb.model.
TemplateBuilderModel.FileAdapter
pdbFileRemoved(TemplateBuilderModel.FileEvent)
- Method in interface uk.ac.ed.simulator_pdb.model.
TemplateBuilderModel.FileListener
pdb_file_ext
- Static variable in class uk.ac.ed.simulator_pdb.model.pdb_handler.
PDBHandler
pdb_file_listener
- Variable in class uk.ac.ed.simulator_pdb.
TemplateJava3DView
pdb_listeners
- Variable in class uk.ac.ed.simulator_pdb.model.
PDBFile
position
- Variable in class uk.ac.ed.simulator_pdb.model.
PDBFile.AminoAcid
position
- Variable in class uk.ac.ed.simulator_pdb.model.
PDBFile.Cluster
positionForBonding(Matrix4d, Matrix4d, double)
- Method in class uk.ac.ed.simulator_pdb.
SimulationJava3DController
probabilities
- Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.
XMLSimRuleTemplate
probability
- Variable in class uk.ac.ed.simulator_pdb.model.
SimRuleTemplate.Likelyhood
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