uk.ac.ed.simulator_pdb.model
Class SimLandscapeTemplate

java.lang.Object
  uk.ac.ed.simulator_pdb.model.TemplateFileObject
      uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate

public class SimLandscapeTemplate

extends TemplateFileObject

Nested Class Summary

Nested classes inherited from class uk.ac.ed.simulator_pdb.model.TemplateFileObject

TemplateFileObject.TemplateFileObjectAdapter, TemplateFileObject.TemplateFileObjectEvent, TemplateFileObject.TemplateFileObjectListener

Field Summary

static int	BELOW_MEMBRANE
static int	HYDROHHILIC
static int	MEMBRANE
static int	STATIC

Constructor Summary

SimLandscapeTemplate(java.lang.String id)

Method Summary

javax.vecmath.Matrix4d	adjustOrientation(javax.vecmath.Matrix4d new_matrix, javax.vecmath.Matrix4d old_matrix)
javax.vecmath.Matrix4d	adjustPosition(javax.vecmath.Matrix4d new_matrix, javax.vecmath.Matrix4d old_matrix)
javax.vecmath.Matrix4d	adjustTransformationMatrix(javax.vecmath.Matrix4d new_matrix, javax.vecmath.Matrix4d old_matrix)
int	getNumberOfProperties()
java.lang.String	getPropertyName(int index)
java.lang.Object	getPropertyValue(int index)
int	getType()
java.lang.String	toString()
float	valueAt(javax.vecmath.Vector3d pos)
float	valueAtFlat(javax.vecmath.Vector3d pos)
float	valueAtHydrophilic(javax.vecmath.Vector3d pos)
float	valueAtMembrane(javax.vecmath.Vector3d pos)
float	valueAtStatic(javax.vecmath.Vector3d pos)

Methods inherited from class uk.ac.ed.simulator_pdb.model.TemplateFileObject

addTemplateListener, fireTemplateFileObjectChangedEvent, fireTemplateFileObjectIdChangedEvent, getId, getTemplateFile, isIdOk, removeTemplateListener, setId, setTemplateFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

MEMBRANE

public static final int MEMBRANE

See Also:

Constant Field Values

HYDROHHILIC

public static final int HYDROHHILIC

See Also:

Constant Field Values

STATIC

public static final int STATIC

See Also:

Constant Field Values

BELOW_MEMBRANE

public static final int BELOW_MEMBRANE

See Also:

Constant Field Values

Constructor Detail

SimLandscapeTemplate

public SimLandscapeTemplate(java.lang.String id)

Method Detail

getNumberOfProperties

public int getNumberOfProperties()

getPropertyName

public java.lang.String getPropertyName(int index)

getPropertyValue

public java.lang.Object getPropertyValue(int index)

getType

public int getType()

adjustOrientation

public javax.vecmath.Matrix4d adjustOrientation(javax.vecmath.Matrix4d new_matrix,
                                                javax.vecmath.Matrix4d old_matrix)

adjustPosition

public javax.vecmath.Matrix4d adjustPosition(javax.vecmath.Matrix4d new_matrix,
                                             javax.vecmath.Matrix4d old_matrix)

adjustTransformationMatrix

public javax.vecmath.Matrix4d adjustTransformationMatrix(javax.vecmath.Matrix4d new_matrix,
                                                         javax.vecmath.Matrix4d old_matrix)

valueAt

public float valueAt(javax.vecmath.Vector3d pos)

valueAtStatic

public float valueAtStatic(javax.vecmath.Vector3d pos)

valueAtHydrophilic

public float valueAtHydrophilic(javax.vecmath.Vector3d pos)

valueAtMembrane

public float valueAtMembrane(javax.vecmath.Vector3d pos)

valueAtFlat

public float valueAtFlat(javax.vecmath.Vector3d pos)

toString

public java.lang.String toString()

Overrides:

toString in class TemplateFileObject