A B C D E F G H I J L M N O P R S T U V W X

C

CANCEL_OPTION - Static variable in class uk.ac.ed.simulator_pdb.View.ChooserDialog

CARBON_COLOUR - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

CARBON_MASS - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

CARBON_RADIUS - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

Constants - class uk.ac.ed.simulator_pdb.model.Constants.

Constants() - Constructor for class uk.ac.ed.simulator_pdb.model.Constants

Controller - class uk.ac.ed.simulator_pdb.Controller.

User: nix Date: May 4, 2004 Time: 11:03:14 AM To change this template use Options | File TemplateBuilderModel.

Controller(Model, View) - Constructor for class uk.ac.ed.simulator_pdb.Controller

Constructs a new Controller.

canBondTo(SimBond, double) - Method in class uk.ac.ed.simulator_pdb.model.SimBond

centreOfMassX - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

centreOfMassY - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

centreOfMassZ - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObject

changed(TemplateFileObject.TemplateFileObjectEvent) - Method in class uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectAdapter

changed(TemplateFileObject.TemplateFileObjectEvent) - Method in interface uk.ac.ed.simulator_pdb.model.TemplateFileObject.TemplateFileObjectListener

checkForBondUpdates(SimBond) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController

clear() - Method in class uk.ac.ed.simulator_pdb.model.TemplateFile

clearObject() - Method in class uk.ac.ed.simulator_pdb.PropertiesView

clone() - Method in class uk.ac.ed.simulator_pdb.model.SimObject

clusterAdded(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

clusterAdded(SimulatorModel.SimulationEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener

clusterRemoved(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

clusterRemoved(SimulatorModel.SimulationEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener

clusterTransformed(SimulatorModel.SimulationEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationAdapter

clusterTransformed(SimulatorModel.SimulationEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimulatorModel.SimulationListener

clusters - Variable in class uk.ac.ed.simulator_pdb.model.PDBFile

collide(SimCluster, Matrix4d) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController

collide(SimCluster, Matrix4d, SimCluster, Matrix4d) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController

collide - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

colourB - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

colourG - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

colourR - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

compareDoubles(double, double, String) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

compareInts(int, int, String) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

comparePath(String[], SimBond, SimBond) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

compareStrings(String, String[]) - Method in class uk.ac.ed.simulator_pdb.model.SimRule

constrain(SimCluster, Matrix4d) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController

containsRuleTemplate(SimRuleTemplate) - Method in class uk.ac.ed.simulator_pdb.model.SimBondTemplate

createDialog() - Method in class uk.ac.ed.simulator_pdb.View.ChooserDialog