uk.ac.ed.simulator_pdb
Class SimulationJava3DController.BondPositions

java.lang.Object
  uk.ac.ed.simulator_pdb.SimulationJava3DController.BondPositions

Enclosing class:

SimulationJava3DController

protected class SimulationJava3DController.BondPositions

extends java.lang.Object

Constructor Summary

SimulationJava3DController.BondPositions()

Method Summary

java.util.Hashtable	getBondPositions(SimCluster cluster, javax.vecmath.Matrix4d transform)
SimBond[]	getBonds()
javax.vecmath.Matrix4d	getBondToWorldMatrix(SimBond bond)
java.util.Hashtable	getBondTransforms(SimCluster cluster, javax.vecmath.Matrix4d transform)
java.util.ArrayList	getNearbyBonds(javax.vecmath.Vector3d pos, double axialDist)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimulationJava3DController.BondPositions

public SimulationJava3DController.BondPositions()

Method Detail

getBonds

public SimBond[] getBonds()

getBondToWorldMatrix

public javax.vecmath.Matrix4d getBondToWorldMatrix(SimBond bond)

getBondPositions

public java.util.Hashtable getBondPositions(SimCluster cluster,
                                            javax.vecmath.Matrix4d transform)

getBondTransforms

public java.util.Hashtable getBondTransforms(SimCluster cluster,
                                             javax.vecmath.Matrix4d transform)

getNearbyBonds

public java.util.ArrayList getNearbyBonds(javax.vecmath.Vector3d pos,
                                          double axialDist)