A B C D E F G H I J L M N O P R S T U V W X

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MAX_BOND_DIST - Static variable in class uk.ac.ed.simulator_pdb.SimulationJava3DController

MAX_COLLISION_DIST - Static variable in class uk.ac.ed.simulator_pdb.SimulationJava3DController

MEMBRANE - Static variable in class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate

Main - class uk.ac.ed.simulator_pdb.Main.

User: nix Date: May 4, 2004 Time: 11:05:55 AM To change this template use Options | File TemplateBuilderModel.

Main() - Constructor for class uk.ac.ed.simulator_pdb.Main

Constructs a new StandAlone class.

Model - class uk.ac.ed.simulator_pdb.model.Model.

Model() - Constructor for class uk.ac.ed.simulator_pdb.model.Model

main(String[]) - Static method in class uk.ac.ed.simulator_pdb.Main

The entru point to the application

mass - Variable in class uk.ac.ed.simulator_pdb.model.PDBFile.AminoAcid

mass - Variable in class uk.ac.ed.simulator_pdb.model.PDBFile.Cluster

mass - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

mergeClusters(SimCluster[]) - Method in class uk.ac.ed.simulator_pdb.model.SimulatorModel

model - Variable in class uk.ac.ed.simulator_pdb.Java3DController

model - Variable in class uk.ac.ed.simulator_pdb.Java3DView

model - Variable in class uk.ac.ed.simulator_pdb.PropertiesController

model - Variable in class uk.ac.ed.simulator_pdb.PropertiesView

model - Variable in class uk.ac.ed.simulator_pdb.TreeView

model - Variable in class uk.ac.ed.simulator_pdb.model.InstanceBuilderModel

model - Variable in class uk.ac.ed.simulator_pdb.model.TemplateBuilderModel

moveCluster(SimCluster) - Method in class uk.ac.ed.simulator_pdb.SimulationJava3DController