A B C D E F G H I J L M N O P R S T U V W X

B

BELOW_MEMBRANE - Static variable in class uk.ac.ed.simulator_pdb.model.SimLandscapeTemplate

BLOCK - Static variable in class uk.ac.ed.simulator_pdb.model.SimRuleTemplate

BOLTZMANN_CONSTANT - Static variable in class uk.ac.ed.simulator_pdb.model.Constants

BOND_NAME - Static variable in class uk.ac.ed.simulator_pdb.model.TemplateFile

blockRuleTemplateIds - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimBondTemplate

bondSiteAdded(SimObjectTemplate.SimObjectTemplateEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

bondSiteAdded(SimObjectTemplate.SimObjectTemplateEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener

bondSiteMoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

bondSiteMoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener

bondSiteRemoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in class uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateAdapter

bondSiteRemoved(SimObjectTemplate.SimObjectTemplateEvent) - Method in interface uk.ac.ed.simulator_pdb.model.SimObjectTemplate.SimObjectTemplateListener

bondTemplateCoordX - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateCoordY - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateCoordZ - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateIds - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateOrientAngle - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateOrientX - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateOrientY - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTemplateOrientZ - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimObjectTemplate

bondTo(SimBond) - Method in class uk.ac.ed.simulator_pdb.model.SimBond

bondedAlpha - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

bondedColourB - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

bondedColourG - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

bondedColourR - Variable in class uk.ac.ed.simulator_pdb.model.neuroml_handler.XMLSimParticleTemplate

breakBond() - Method in class uk.ac.ed.simulator_pdb.model.SimBond