uk.ac.ed.morphml_handler
Class Morphology

java.lang.Object
  org.virtualratbrain.namespace.impl.MorphologyImpl
      uk.ac.ed.morphml_handler.Morphology

All Implemented Interfaces:

com.sun.xml.bind.JAXBObject, org.virtualratbrain.namespace.impl.runtime.UnmarshallableObject, org.virtualratbrain.namespace.impl.runtime.ValidatableObject, org.virtualratbrain.namespace.impl.runtime.XMLSerializable, org.virtualratbrain.namespace.Morphology, MorphMLEntity

public class Morphology
extends org.virtualratbrain.namespace.impl.MorphologyImpl
implements MorphMLEntity

Nested Class Summary

static class	Morphology.MorphologyAdapter
static class	Morphology.MorphologyEvent
static interface	Morphology.MorphologyListener

Nested classes/interfaces inherited from class org.virtualratbrain.namespace.impl.MorphologyImpl

org.virtualratbrain.namespace.impl.MorphologyImpl.CellsTypeImpl, org.virtualratbrain.namespace.impl.MorphologyImpl.FeaturesTypeImpl, org.virtualratbrain.namespace.impl.MorphologyImpl.PointsTypeImpl, org.virtualratbrain.namespace.impl.MorphologyImpl.Unmarshaller

Nested classes/interfaces inherited from interface uk.ac.ed.morphml_handler.MorphMLEntity

MorphMLEntity.MorphMLEntityListener

Nested classes/interfaces inherited from interface org.virtualratbrain.namespace.Morphology

org.virtualratbrain.namespace.Morphology.CellsType, org.virtualratbrain.namespace.Morphology.FeaturesType, org.virtualratbrain.namespace.Morphology.PointsType

Field Summary

protected MorphologyData	morphology_data
protected ArrayList	morphology_listeners
protected Hashtable	points_table
protected URI	uri
protected boolean	visible

Fields inherited from class org.virtualratbrain.namespace.impl.MorphologyImpl

_Cells, _Features, _Header, _LengthUnits, _Name, _Points, _Properties, _VolumeUnits, version

Constructor Summary

Morphology()

Method Summary

void	addCell(Cell cell)
void	addFeature(Feature feature)
void	addMorphologyListener(Morphology.MorphologyListener listener)
void	addPoint(org.virtualratbrain.namespace.Point point)
boolean	canHide()
boolean	canShow()
protected void	fireCellAdded(Cell cell)
protected void	fireCellRemoved(Cell cell)
protected void	fireFeatureAdded(Feature feature)
protected void	fireFeatureRemoved(Feature feature)
MorphologyData	getMorphologyData()
MorphMLEntity	getParentEntity()
org.virtualratbrain.namespace.Point	getPoint(String id)
Hashtable	getPointTale()
org.virtualratbrain.namespace.Property	getProperty(String name)
URI	getURI()
URL	getURL()
void	hide()
boolean	isVisible()
void	removeCell(Cell cell)
void	removeFeature(Feature feature)
void	removeMorphologyListener(Morphology.MorphologyListener listener)
void	setMorphologyData(MorphologyData morphology_list)
void	setProperties(Properties properties)
void	setURI(URI uri)
protected void	setVisible(boolean visible)
protected void	setVisibleDown(boolean visible)
protected void	setVisibleUp(boolean visible)
void	show()
String	toString()
void	validate()

Methods inherited from class org.virtualratbrain.namespace.impl.MorphologyImpl

createRawValidator, createUnmarshaller, getCells, getFeatures, getHeader, getLengthUnits, getName, getPoints, getPrimaryInterface, getProperties, getVolumeUnits, serializeAttributes, serializeBody, serializeURIs, setCells, setFeatures, setHeader, setLengthUnits, setName, setPoints, setProperties, setVolumeUnits

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

morphology_data

protected MorphologyData morphology_data

visible

protected boolean visible

uri

protected URI uri

morphology_listeners

protected ArrayList morphology_listeners

points_table

protected Hashtable points_table

Constructor Detail

Morphology

public Morphology()

Method Detail

isVisible

public boolean isVisible()

Specified by:

isVisible in interface MorphMLEntity

canShow

public boolean canShow()

Specified by:

canShow in interface MorphMLEntity

canHide

public boolean canHide()

Specified by:

canHide in interface MorphMLEntity

show

public void show()

Specified by:

show in interface MorphMLEntity

hide

public void hide()

Specified by:

hide in interface MorphMLEntity

setVisible

protected void setVisible(boolean visible)

setVisibleUp

protected void setVisibleUp(boolean visible)

setVisibleDown

protected void setVisibleDown(boolean visible)

validate

public void validate()

Specified by:

validate in interface MorphMLEntity

toString

public String toString()

Overrides:

toString in class Object

getParentEntity

public MorphMLEntity getParentEntity()

Specified by:

getParentEntity in interface MorphMLEntity

getMorphologyData

public MorphologyData getMorphologyData()

setMorphologyData

public void setMorphologyData(MorphologyData morphology_list)

getURI

public URI getURI()

getURL

public URL getURL()

setURI

public void setURI(URI uri)

getProperty

public org.virtualratbrain.namespace.Property getProperty(String name)

setProperties

public void setProperties(Properties properties)

addPoint

public void addPoint(org.virtualratbrain.namespace.Point point)

getPoint

public org.virtualratbrain.namespace.Point getPoint(String id)

getPointTale

public Hashtable getPointTale()

addCell

public void addCell(Cell cell)

removeCell

public void removeCell(Cell cell)

addFeature

public void addFeature(Feature feature)

removeFeature

public void removeFeature(Feature feature)

addMorphologyListener

public void addMorphologyListener(Morphology.MorphologyListener listener)

removeMorphologyListener

public void removeMorphologyListener(Morphology.MorphologyListener listener)

fireCellAdded

protected void fireCellAdded(Cell cell)

fireCellRemoved

protected void fireCellRemoved(Cell cell)

fireFeatureAdded

protected void fireFeatureAdded(Feature feature)

fireFeatureRemoved

protected void fireFeatureRemoved(Feature feature)