us.nj.nwk.overlapping_analysis
Class Model.Population

java.lang.Object
  us.nj.nwk.overlapping_analysis.Model.Population

Enclosing class:

Model

public class Model.Population
extends Object

Constructor Summary

Model.Population()

Method Summary

void	activateCellPopulation(Feature f)
void	addPopulationListener(Model.PopulationListener listener)
void	analyseVoxels()
void	changeCellPopulation(Model.CellPopulation cp)
void	close()
int[]	createIndex(double[] point, double[] minpoint)
void	createVoxels()
void	deactivateCellPopulation(Feature f)
protected void	fireCellPopulationSelected(Model.CellPopulation cp)
protected void	fireChangeCellPopulation(Model.CellPopulation cp)
protected void	fireMorphologyAdded(Morphology morphology)
protected void	fireMorphologyRemoved(Morphology morphology)
Color	generateColor()
HashSet	getActiveCellPopulations()
Vector	getActiveCellPopulationsVector()
Model.CellPopulation	getCellPopulation(Feature f)
Enumeration	getCellPopulations()
double[]	getMaximumXYZ()
Model.Voxel	getMaxVoxel()
double[]	getMinimumXYZ()
Model.Voxel	getMinVoxel()
Vector	getMorphologies()
Hashtable	getPointsTable(Morphology morphology)
Feature	getSelectedFeature()
Model.Voxel	getVoxel(int[] index)
protected Enumeration	getVoxels()
void	modelChanged()
void	openFile(File file)
void	removePopulationListener(Model.PopulationListener listener)
void	selectCellPopulation(Model.CellPopulation cp)
void	selectFeature(Feature f)
void	setMinimumXYZ(double[] min_xyz)
void	setTresholds()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Model.Population

public Model.Population()

Method Detail

openFile

public void openFile(File file)

selectFeature

public void selectFeature(Feature f)

getCellPopulation

public Model.CellPopulation getCellPopulation(Feature f)

getCellPopulations

public Enumeration getCellPopulations()

modelChanged

public void modelChanged()

selectCellPopulation

public void selectCellPopulation(Model.CellPopulation cp)

setTresholds

public void setTresholds()

changeCellPopulation

public void changeCellPopulation(Model.CellPopulation cp)

activateCellPopulation

public void activateCellPopulation(Feature f)

deactivateCellPopulation

public void deactivateCellPopulation(Feature f)

getVoxel

public Model.Voxel getVoxel(int[] index)

getPointsTable

public Hashtable getPointsTable(Morphology morphology)

createVoxels

public void createVoxels()

createIndex

public int[] createIndex(double[] point,
                         double[] minpoint)

analyseVoxels

public void analyseVoxels()

getMorphologies

public Vector getMorphologies()

close

public void close()

addPopulationListener

public void addPopulationListener(Model.PopulationListener listener)

removePopulationListener

public void removePopulationListener(Model.PopulationListener listener)

getVoxels

protected Enumeration getVoxels()

fireChangeCellPopulation

protected void fireChangeCellPopulation(Model.CellPopulation cp)

fireCellPopulationSelected

protected void fireCellPopulationSelected(Model.CellPopulation cp)

fireMorphologyAdded

protected void fireMorphologyAdded(Morphology morphology)

fireMorphologyRemoved

protected void fireMorphologyRemoved(Morphology morphology)

getSelectedFeature

public Feature getSelectedFeature()

getMinimumXYZ

public double[] getMinimumXYZ()

setMinimumXYZ

public void setMinimumXYZ(double[] min_xyz)

getMaximumXYZ

public double[] getMaximumXYZ()

getActiveCellPopulations

public HashSet getActiveCellPopulations()

getActiveCellPopulationsVector

public Vector getActiveCellPopulationsVector()

generateColor

public Color generateColor()

getMinVoxel

public Model.Voxel getMinVoxel()

getMaxVoxel

public Model.Voxel getMaxVoxel()