uk.ac.ed.morphml_handler.neurolucida
Class NeurolucidaHandler

java.lang.Object
  uk.ac.ed.morphml_handler.neurolucida.NeurolucidaHandler

public class NeurolucidaHandler
extends Object

Field Summary

static String	ext
static double	SCALE

Constructor Summary

NeurolucidaHandler()

Method Summary

protected void	addBranch(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject tree, MorphMLHandler morphml_handler, Morphology morphology, Cell cell, org.virtualratbrain.namespace.Segment parent_segment)
protected void	addBranch(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject tree, MorphMLHandler morphml_handler, Morphology morphology, Cell cell, org.virtualratbrain.namespace.Segment parent_segment, String group_name)
protected void	addFreePoints(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject marker, MorphMLHandler morphml_handler, Morphology morphology, org.virtualratbrain.namespace.FreePoints points)
protected void	addPolygon(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject contour, MorphMLHandler morphml_handler, Morphology morphology, org.virtualratbrain.namespace.Polygon polygon)
protected void	addProperties(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject object, MorphMLHandler morphml_handler, Morphology morphology, Properties morphml_properties)
protected void	addProperty(Properties properties, org.virtualratbrain.namespace.Property property)
protected Color	getColor(String color_name)
static FileFilter	getFileFilter()
protected org.virtualratbrain.namespace.Property	getProperty(Properties morphml_properties, String name)
static boolean	isNeurolucidaFile(File file)
static boolean	isNeurolucidaFileName(String file_name)
Morphology	readStream(MorphMLHandler morphml_Handler, InputStream input_stream)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ext

public static final String ext

See Also:

Constant Field Values

SCALE

public static double SCALE

Constructor Detail

NeurolucidaHandler

public NeurolucidaHandler()

Method Detail

getFileFilter

public static FileFilter getFileFilter()

isNeurolucidaFile

public static boolean isNeurolucidaFile(File file)

isNeurolucidaFileName

public static boolean isNeurolucidaFileName(String file_name)

readStream

public Morphology readStream(MorphMLHandler morphml_Handler,
                             InputStream input_stream)

addProperties

protected void addProperties(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject object,
                             MorphMLHandler morphml_handler,
                             Morphology morphology,
                             Properties morphml_properties)

addPolygon

protected void addPolygon(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject contour,
                          MorphMLHandler morphml_handler,
                          Morphology morphology,
                          org.virtualratbrain.namespace.Polygon polygon)

addFreePoints

protected void addFreePoints(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject marker,
                             MorphMLHandler morphml_handler,
                             Morphology morphology,
                             org.virtualratbrain.namespace.FreePoints points)

addBranch

protected void addBranch(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject tree,
                         MorphMLHandler morphml_handler,
                         Morphology morphology,
                         Cell cell,
                         org.virtualratbrain.namespace.Segment parent_segment)

addBranch

protected void addBranch(uk.ac.ed.morphml_handler.neurolucida.NeurolucidaObject tree,
                         MorphMLHandler morphml_handler,
                         Morphology morphology,
                         Cell cell,
                         org.virtualratbrain.namespace.Segment parent_segment,
                         String group_name)

getColor

protected Color getColor(String color_name)

getProperty

protected org.virtualratbrain.namespace.Property getProperty(Properties morphml_properties,
                                                             String name)

addProperty

protected void addProperty(Properties properties,
                           org.virtualratbrain.namespace.Property property)