uk.ac.ed.morphml_handler
Class MorphMLJava3DPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  uk.ac.ed.java3d_handler.Java3DPanel
                      uk.ac.ed.morphml_handler.MorphMLJava3DPanel

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class MorphMLJava3DPanel
extends Java3DPanel

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

static javax.vecmath.Color3f	detault_color
static double	SCALE
static int	SOLID
static int	WIREFRAME

Fields inherited from class uk.ac.ed.java3d_handler.Java3DPanel

BACK_VIEW, behaviour, BOTTOM_VIEW, canvas, focused_border, FRONT_VIEW, LEFT_VIEW, model, PARALLEL_PROJECTION, PERSPECTIVE_PROJECTION, popup_menu, RIGHT_VIEW, TOP_VIEW, unfocused_border, viewer, viewing_platform

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

MorphMLJava3DPanel(double bound_size)

MorphMLJava3DPanel(Java3DHandler handler)

Method Summary

void	addCell(Cell cell)
void	addCell(Cell cell, int fill_type)
void	addFeature(Feature feature)
void	addFeature(Feature feature, int fill_type)
void	addLocalPoint(AffineWarpPoint point)
void	addLocalPoint(AffineWarpPoint point, int fill_type)
void	addMorphology(Morphology morphology)
void	addMorphology(Morphology morphology, int fill_type)
void	addMorphologyData(MorphologyData morphology_data)
void	addMorphologyData(MorphologyData morphology_data, int fill_type)
void	addWorldPoint(AffineWarpPoint point)
void	addWorldPoint(AffineWarpPoint point, int fill_type)
protected javax.media.j3d.Appearance	generateAppearance(Properties properties, int fill_type)
protected javax.media.j3d.Appearance	generateSelectedAppearance(Properties properties, int fill_type)
void	removeMorphology(Morphology morphology)
void	removeMorphologyData(MorphologyData morphology_data)
void	removePoint(AffineWarpPoint point)
javax.media.j3d.BranchGroup	renderCell(Cell cell, int fill_type)
javax.media.j3d.Shape3D	renderClosedPolygonsSolid(org.virtualratbrain.namespace.Polygon[] polygons, Hashtable points_table)
javax.media.j3d.Shape3D	renderClosedPolygonWireframe(org.virtualratbrain.namespace.Polygon polygon, Hashtable points_table)
javax.media.j3d.Shape3D	renderColouredClosedPolygonWireframe(org.virtualratbrain.namespace.Polygon polygon, Hashtable points_table)
javax.media.j3d.Shape3D	renderCrosshairWireframe()
javax.media.j3d.BranchGroup	renderFeature(Feature feature, int fill_type)
javax.media.j3d.Shape3D	renderFreePointsSolid(org.virtualratbrain.namespace.FreePoints free_points, Hashtable points_table)
javax.media.j3d.Shape3D	renderFreePointsWireframe(org.virtualratbrain.namespace.FreePoints free_points, Hashtable points_table)
javax.media.j3d.BranchGroup	renderLocalPoint(AffineWarpPoint point, int fill_type)
javax.media.j3d.BranchGroup	renderMorphology(Morphology morphology, int fill_type)
javax.media.j3d.Shape3D	renderOpenPolygonsSolid(org.virtualratbrain.namespace.Polygon[] polygons, Hashtable points_table)
javax.media.j3d.Shape3D	renderOpenPolygonWireframe(org.virtualratbrain.namespace.Polygon polygon, Hashtable points_table)
javax.media.j3d.Shape3D	renderPointSolid()
javax.media.j3d.Shape3D	renderPolygonSolid(org.virtualratbrain.namespace.Polygon polygon, Hashtable points_table)
javax.media.j3d.Shape3D	renderSegmentsSolid(org.virtualratbrain.namespace.Segment[] segments, Hashtable points_table)
javax.media.j3d.Shape3D	renderSegmentsWireframe(org.virtualratbrain.namespace.Segment[] segments, Hashtable points_table)
javax.media.j3d.Shape3D	renderSegmentWireframe(org.virtualratbrain.namespace.Segment segment, Hashtable points_table)
javax.media.j3d.Shape3D	renderSurface(javax.vecmath.Point3d[][] surface)
javax.media.j3d.BranchGroup	renderWorldPoint(AffineWarpPoint point, int fill_type)
javax.vecmath.Point3d[][]	surfaceSmoother(javax.vecmath.Point3d[][] surface)
void	transformMorphology(Morphology morphology, javax.vecmath.Matrix4d matrix)
void	transformPoint(AffineWarpPoint point, javax.vecmath.Matrix4d matrix)

Methods inherited from class uk.ac.ed.java3d_handler.Java3DPanel

addGeometry, addGeometry, addGeometry, addSelectableGeometry, addSelectableGeometry, enableFog, enableLight, getCanvas, getGeometry, getHandler, getModel, getTransformGroup, getTransformGroup, getView, getViewTransform, initBehavior, initCanvas, initCursors, initModel, initPanel, initPopupMenu, initView, makeLive, print, removeGeometry, removeGeometry, save, selectGeometry, selectGeometry, setParallelView, setPerspectiveView, setSelectedAppearance, setViewPosition, setViewProjection, setViewTransform

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

detault_color

public static final javax.vecmath.Color3f detault_color

SOLID

public static final int SOLID

See Also:

Constant Field Values

WIREFRAME

public static final int WIREFRAME

See Also:

Constant Field Values

SCALE

public static double SCALE

Constructor Detail

MorphMLJava3DPanel

public MorphMLJava3DPanel(double bound_size)

MorphMLJava3DPanel

public MorphMLJava3DPanel(Java3DHandler handler)

Method Detail

addMorphologyData

public void addMorphologyData(MorphologyData morphology_data)

addMorphologyData

public void addMorphologyData(MorphologyData morphology_data,
                              int fill_type)

removeMorphologyData

public void removeMorphologyData(MorphologyData morphology_data)

addMorphology

public void addMorphology(Morphology morphology)

addMorphology

public void addMorphology(Morphology morphology,
                          int fill_type)

removeMorphology

public void removeMorphology(Morphology morphology)

transformMorphology

public void transformMorphology(Morphology morphology,
                                javax.vecmath.Matrix4d matrix)

addCell

public void addCell(Cell cell)

addCell

public void addCell(Cell cell,
                    int fill_type)

addFeature

public void addFeature(Feature feature)

addFeature

public void addFeature(Feature feature,
                       int fill_type)

addLocalPoint

public void addLocalPoint(AffineWarpPoint point)

addLocalPoint

public void addLocalPoint(AffineWarpPoint point,
                          int fill_type)

addWorldPoint

public void addWorldPoint(AffineWarpPoint point)

addWorldPoint

public void addWorldPoint(AffineWarpPoint point,
                          int fill_type)

removePoint

public void removePoint(AffineWarpPoint point)

transformPoint

public void transformPoint(AffineWarpPoint point,
                           javax.vecmath.Matrix4d matrix)

renderLocalPoint

public javax.media.j3d.BranchGroup renderLocalPoint(AffineWarpPoint point,
                                                    int fill_type)

renderWorldPoint

public javax.media.j3d.BranchGroup renderWorldPoint(AffineWarpPoint point,
                                                    int fill_type)

renderMorphology

public javax.media.j3d.BranchGroup renderMorphology(Morphology morphology,
                                                    int fill_type)

renderCell

public javax.media.j3d.BranchGroup renderCell(Cell cell,
                                              int fill_type)

renderFeature

public javax.media.j3d.BranchGroup renderFeature(Feature feature,
                                                 int fill_type)

renderSegmentWireframe

public javax.media.j3d.Shape3D renderSegmentWireframe(org.virtualratbrain.namespace.Segment segment,
                                                      Hashtable points_table)

renderSegmentsWireframe

public javax.media.j3d.Shape3D renderSegmentsWireframe(org.virtualratbrain.namespace.Segment[] segments,
                                                       Hashtable points_table)

renderFreePointsWireframe

public javax.media.j3d.Shape3D renderFreePointsWireframe(org.virtualratbrain.namespace.FreePoints free_points,
                                                         Hashtable points_table)

renderOpenPolygonWireframe

public javax.media.j3d.Shape3D renderOpenPolygonWireframe(org.virtualratbrain.namespace.Polygon polygon,
                                                          Hashtable points_table)

renderClosedPolygonWireframe

public javax.media.j3d.Shape3D renderClosedPolygonWireframe(org.virtualratbrain.namespace.Polygon polygon,
                                                            Hashtable points_table)

renderColouredClosedPolygonWireframe

public javax.media.j3d.Shape3D renderColouredClosedPolygonWireframe(org.virtualratbrain.namespace.Polygon polygon,
                                                                    Hashtable points_table)

renderCrosshairWireframe

public javax.media.j3d.Shape3D renderCrosshairWireframe()

renderOpenPolygonsSolid

public javax.media.j3d.Shape3D renderOpenPolygonsSolid(org.virtualratbrain.namespace.Polygon[] polygons,
                                                       Hashtable points_table)

renderClosedPolygonsSolid

public javax.media.j3d.Shape3D renderClosedPolygonsSolid(org.virtualratbrain.namespace.Polygon[] polygons,
                                                         Hashtable points_table)

renderPolygonSolid

public javax.media.j3d.Shape3D renderPolygonSolid(org.virtualratbrain.namespace.Polygon polygon,
                                                  Hashtable points_table)

renderSurface

public javax.media.j3d.Shape3D renderSurface(javax.vecmath.Point3d[][] surface)

renderSegmentsSolid

public javax.media.j3d.Shape3D renderSegmentsSolid(org.virtualratbrain.namespace.Segment[] segments,
                                                   Hashtable points_table)

renderFreePointsSolid

public javax.media.j3d.Shape3D renderFreePointsSolid(org.virtualratbrain.namespace.FreePoints free_points,
                                                     Hashtable points_table)

renderPointSolid

public javax.media.j3d.Shape3D renderPointSolid()

surfaceSmoother

public javax.vecmath.Point3d[][] surfaceSmoother(javax.vecmath.Point3d[][] surface)

generateAppearance

protected javax.media.j3d.Appearance generateAppearance(Properties properties,
                                                        int fill_type)

generateSelectedAppearance

protected javax.media.j3d.Appearance generateSelectedAppearance(Properties properties,
                                                                int fill_type)