A C F G H I J L M N O P R S T U V

A

addPoint(Point) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 
addPopulationListener(Model.PopulationListener) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 
asynchronous() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.LaunchAction
 

C

close() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 
Controller - Class in uk.ac.ed.isodensity_surface_mapper
 
Controller(Model, View, int) - Constructor for class uk.ac.ed.isodensity_surface_mapper.Controller
Constructs a new Controller.

F

firePopulationAdded(Model.Population) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 
firePopulationRemoved(Model.Population) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 

G

getCloneableTopComponent() - Method in class uk.ac.ed.isodensity_surface_mapper.NetBeansModule
 
getContainer() - Method in class uk.ac.ed.isodensity_surface_mapper.View
Returns the container
getHelpCtx() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.IsodensitySurfaceMapperLaunchActionAction
 
getHelpCtx() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.LaunchAction
 
getIcon() - Method in class uk.ac.ed.isodensity_surface_mapper.NetBeansModuleView
 
getIndex() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 
getModel() - Method in class uk.ac.ed.isodensity_surface_mapper.View
Returns the model
getMorphology() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 
getName() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.IsodensitySurfaceMapperLaunchActionAction
 
getName() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.LaunchAction
 
getPersistenceType() - Method in class uk.ac.ed.isodensity_surface_mapper.NetBeansModuleView
 
getPoints() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 
getPopulation() - Method in class uk.ac.ed.isodensity_surface_mapper.Model
 
getPopulation() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.PopulationEvent
Returns the affected Morphml
getPosition() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 
getVoxel(int, int, int) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 
getVoxels() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 

H

HALF_VOXEL_SIZE_X - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 
HALF_VOXEL_SIZE_Y - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 
HALF_VOXEL_SIZE_Z - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 

I

iconResource() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.IsodensitySurfaceMapperLaunchActionAction
 
iconResource() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.LaunchAction
 
IsodensitySurfaceMapperLaunchActionAction - Class in uk.ac.ed.isodensity_surface_mapper.netbeans
Action that can always be invoked and work procedurally.
IsodensitySurfaceMapperLaunchActionAction() - Constructor for class uk.ac.ed.isodensity_surface_mapper.netbeans.IsodensitySurfaceMapperLaunchActionAction
 
isVisible() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 

J

Java3DController - Class in uk.ac.ed.isodensity_surface_mapper
 
Java3DController(Model, Java3DView) - Constructor for class uk.ac.ed.isodensity_surface_mapper.Java3DController
Constructs a new Java3DController
Java3DView - Class in uk.ac.ed.isodensity_surface_mapper
 
Java3DView(Model) - Constructor for class uk.ac.ed.isodensity_surface_mapper.Java3DView
 

L

LaunchAction - Class in uk.ac.ed.isodensity_surface_mapper.netbeans
Action that can always be invoked and work procedurally.
LaunchAction() - Constructor for class uk.ac.ed.isodensity_surface_mapper.netbeans.LaunchAction
 

M

main(String[]) - Static method in class uk.ac.ed.isodensity_surface_mapper.StandAlone
 
Model - Class in uk.ac.ed.isodensity_surface_mapper
 
Model() - Constructor for class uk.ac.ed.isodensity_surface_mapper.Model
 
Model.Population - Class in uk.ac.ed.isodensity_surface_mapper
 
Model.Population() - Constructor for class uk.ac.ed.isodensity_surface_mapper.Model.Population
 
Model.PopulationEvent - Class in uk.ac.ed.isodensity_surface_mapper
 
Model.PopulationEvent(Object, Model.Population) - Constructor for class uk.ac.ed.isodensity_surface_mapper.Model.PopulationEvent
Constructs a new MorphologyEvent
Model.PopulationListener - Interface in uk.ac.ed.isodensity_surface_mapper
 
Model.Voxel - Class in uk.ac.ed.isodensity_surface_mapper
 
Model.Voxel(int, int, int) - Constructor for class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 

N

NETBEANS_MODULE_VIEW - Static variable in class uk.ac.ed.isodensity_surface_mapper.View
 
NetBeansModule - Class in uk.ac.ed.isodensity_surface_mapper
 
NetBeansModule() - Constructor for class uk.ac.ed.isodensity_surface_mapper.NetBeansModule
Constructs a new StandAlone class.
NetBeansModule(File) - Constructor for class uk.ac.ed.isodensity_surface_mapper.NetBeansModule
 
NetBeansModuleController - Class in uk.ac.ed.isodensity_surface_mapper
 
NetBeansModuleController(Model, NetBeansModuleView) - Constructor for class uk.ac.ed.isodensity_surface_mapper.NetBeansModuleController
Constructs a new SwingController
NetBeansModuleView - Class in uk.ac.ed.isodensity_surface_mapper
 
NetBeansModuleView() - Constructor for class uk.ac.ed.isodensity_surface_mapper.NetBeansModuleView
 
NetBeansModuleView(Model) - Constructor for class uk.ac.ed.isodensity_surface_mapper.NetBeansModuleView
 

O

openMorphologyFile(File) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 

P

performAction() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.IsodensitySurfaceMapperLaunchActionAction
 
performAction() - Method in class uk.ac.ed.isodensity_surface_mapper.netbeans.LaunchAction
 
populationAdded(Model.PopulationEvent) - Method in interface uk.ac.ed.isodensity_surface_mapper.Model.PopulationListener
Invoked when morphology has been added
populationRemoved(Model.PopulationEvent) - Method in interface uk.ac.ed.isodensity_surface_mapper.Model.PopulationListener
Invoked when morphology has been removed
preferredID() - Method in class uk.ac.ed.isodensity_surface_mapper.NetBeansModuleView
 

R

removePopulationListener(Model.PopulationListener) - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Population
 

S

selectFileToOpen() - Static method in class uk.ac.ed.isodensity_surface_mapper.View
Pops up a file chooser allowing the file to be opened to be selected.
StandAlone - Class in uk.ac.ed.isodensity_surface_mapper
 
StandAlone() - Constructor for class uk.ac.ed.isodensity_surface_mapper.StandAlone
 
StandAlone(File) - Constructor for class uk.ac.ed.isodensity_surface_mapper.StandAlone
 
STANDALONE_VIEW - Static variable in class uk.ac.ed.isodensity_surface_mapper.View
 
SwingController - Class in uk.ac.ed.isodensity_surface_mapper
 
SwingController(Model, SwingView) - Constructor for class uk.ac.ed.isodensity_surface_mapper.SwingController
Constructs a new SwingController
SwingView - Class in uk.ac.ed.isodensity_surface_mapper
 
SwingView(Model) - Constructor for class uk.ac.ed.isodensity_surface_mapper.SwingView
Constructs a new SwingView

T

ToolbarController - Class in uk.ac.ed.isodensity_surface_mapper
 
ToolbarController(Model, Java3DModel, ToolbarView) - Constructor for class uk.ac.ed.isodensity_surface_mapper.ToolbarController
Constructs a new SwingController
ToolbarView - Class in uk.ac.ed.isodensity_surface_mapper
 
ToolbarView(Model) - Constructor for class uk.ac.ed.isodensity_surface_mapper.ToolbarView
 
toString() - Method in class uk.ac.ed.isodensity_surface_mapper.Model.Voxel
 

U

uk.ac.ed.isodensity_surface_mapper - package uk.ac.ed.isodensity_surface_mapper
 
uk.ac.ed.isodensity_surface_mapper.netbeans - package uk.ac.ed.isodensity_surface_mapper.netbeans
 

V

View - Class in uk.ac.ed.isodensity_surface_mapper
 
View(Model, int) - Constructor for class uk.ac.ed.isodensity_surface_mapper.View
Constructs a new View
VOXEL_SIZE_X - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 
VOXEL_SIZE_Y - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 
VOXEL_SIZE_Z - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 
VOXEL_TRESHOLD - Static variable in class uk.ac.ed.isodensity_surface_mapper.Model
 

A C F G H I J L M N O P R S T U V