A C D E F G I J L M N O P R S T U V W

A

addListeners(MorphMLHandler) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(MorphologyData) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(AffineWarpDataStructure) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(AffineWarpPoint) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(Morphology) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(Cell) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(Feature) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
addListeners(MorphMLHandler) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
addListeners(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
addListeners(MorphologyData) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
addListeners(Morphology) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
addProjectListener(Model.ProjectListener) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
addSelectionListener(Model.SelectionListener) - Method in class uk.ac.ed.ebrainbuilder.Model
 
asynchronous() - Method in class uk.ac.ed.ebrainbuilder.netbeans.LaunchAction
 

C

cell_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
closeProject() - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
Controller - Class in uk.ac.ed.ebrainbuilder
 
Controller(Model, View, int) - Constructor for class uk.ac.ed.ebrainbuilder.Controller
 

D

DEPTH - Static variable in class uk.ac.ed.ebrainbuilder.Java3DView
 

E

enableBusyCursor(boolean) - Static method in class uk.ac.ed.ebrainbuilder.View
 
ext - Static variable in class uk.ac.ed.ebrainbuilder.ProjectHandler
 

F

feature_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
fireMorphologyTransformed(Morphology, Matrix4d) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
fireSelectedObjectChanged(Object, Object) - Method in class uk.ac.ed.ebrainbuilder.Model
 

G

getCloneableTopComponent() - Method in class uk.ac.ed.ebrainbuilder.NetBeanModule
 
getContainer() - Method in class uk.ac.ed.ebrainbuilder.View
 
getDeselectedObject() - Method in class uk.ac.ed.ebrainbuilder.Model.SelectionEvent
 
getFileFilter() - Static method in class uk.ac.ed.ebrainbuilder.ProjectHandler
 
getHelpCtx() - Method in class uk.ac.ed.ebrainbuilder.netbeans.LaunchAction
 
getIcon() - Method in class uk.ac.ed.ebrainbuilder.NetBeanModuleView
 
getMatrix() - Method in class uk.ac.ed.ebrainbuilder.Model.ProjectEvent
 
getModel() - Method in class uk.ac.ed.ebrainbuilder.View
 
getMorphMLHandler() - Method in class uk.ac.ed.ebrainbuilder.Model
 
getMorphology() - Method in class uk.ac.ed.ebrainbuilder.Model.ProjectEvent
 
getMorphologyList() - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
getName() - Method in class uk.ac.ed.ebrainbuilder.netbeans.LaunchAction
 
getPersistenceType() - Method in class uk.ac.ed.ebrainbuilder.NetBeanModuleView
 
getProject() - Method in class uk.ac.ed.ebrainbuilder.Model
 
getSelectedObject() - Method in class uk.ac.ed.ebrainbuilder.Model
 
getSelectedObject() - Method in class uk.ac.ed.ebrainbuilder.Model.SelectionEvent
 
getTransform(Morphology) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
getWarpButton() - Method in class uk.ac.ed.ebrainbuilder.PropertiesView
 
getWarpPointsTable() - Method in class uk.ac.ed.ebrainbuilder.PropertiesView
 

I

iconResource() - Method in class uk.ac.ed.ebrainbuilder.netbeans.LaunchAction
 
initListeners() - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
initListeners() - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
initPanel() - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
initPlanes() - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
initScrollPane() - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
initTableListener() - Method in class uk.ac.ed.ebrainbuilder.PropertiesController
 
initTree() - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
isProjectFile(File) - Static method in class uk.ac.ed.ebrainbuilder.ProjectHandler
 
isProjectFileName(String) - Static method in class uk.ac.ed.ebrainbuilder.ProjectHandler
 
isSelected(Object) - Method in class uk.ac.ed.ebrainbuilder.Model
 

J

Java3DController - Class in uk.ac.ed.ebrainbuilder
 
Java3DController(Model, Java3DView) - Constructor for class uk.ac.ed.ebrainbuilder.Java3DController
 
Java3DView - Class in uk.ac.ed.ebrainbuilder
 
Java3DView(Model) - Constructor for class uk.ac.ed.ebrainbuilder.Java3DView
 

L

LaunchAction - Class in uk.ac.ed.ebrainbuilder.netbeans
Action that can always be invoked and work procedurally.
LaunchAction() - Constructor for class uk.ac.ed.ebrainbuilder.netbeans.LaunchAction
 

M

main(String[]) - Static method in class uk.ac.ed.ebrainbuilder.StandAlone
 
Model - Class in uk.ac.ed.ebrainbuilder
 
Model() - Constructor for class uk.ac.ed.ebrainbuilder.Model
 
Model.Project - Class in uk.ac.ed.ebrainbuilder
 
Model.Project() - Constructor for class uk.ac.ed.ebrainbuilder.Model.Project
 
Model.ProjectAdapter - Class in uk.ac.ed.ebrainbuilder
 
Model.ProjectAdapter() - Constructor for class uk.ac.ed.ebrainbuilder.Model.ProjectAdapter
 
Model.ProjectEvent - Class in uk.ac.ed.ebrainbuilder
 
Model.ProjectEvent(Object, Morphology) - Constructor for class uk.ac.ed.ebrainbuilder.Model.ProjectEvent
 
Model.ProjectEvent(Object, Morphology, Matrix4d) - Constructor for class uk.ac.ed.ebrainbuilder.Model.ProjectEvent
 
Model.ProjectListener - Interface in uk.ac.ed.ebrainbuilder
 
Model.SelectionAdapter - Class in uk.ac.ed.ebrainbuilder
 
Model.SelectionAdapter() - Constructor for class uk.ac.ed.ebrainbuilder.Model.SelectionAdapter
 
Model.SelectionEvent - Class in uk.ac.ed.ebrainbuilder
 
Model.SelectionEvent(Object, Object, Object) - Constructor for class uk.ac.ed.ebrainbuilder.Model.SelectionEvent
 
Model.SelectionListener - Interface in uk.ac.ed.ebrainbuilder
 
morphml_handler - Variable in class uk.ac.ed.ebrainbuilder.Model
 
morphml_handler_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
morphml_handler_listener - Variable in class uk.ac.ed.ebrainbuilder.TreeView
 
morphology_data_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
morphology_data_listener - Variable in class uk.ac.ed.ebrainbuilder.TreeView
 
morphology_list - Variable in class uk.ac.ed.ebrainbuilder.Model.Project
 
morphology_list_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
morphology_list_listener - Variable in class uk.ac.ed.ebrainbuilder.TreeView
 
morphology_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
morphology_listener - Variable in class uk.ac.ed.ebrainbuilder.TreeView
 
morphology_transforms - Variable in class uk.ac.ed.ebrainbuilder.Model.Project
 
morphologyTransformed(Model.ProjectEvent) - Method in class uk.ac.ed.ebrainbuilder.Model.ProjectAdapter
 
morphologyTransformed(Model.ProjectEvent) - Method in interface uk.ac.ed.ebrainbuilder.Model.ProjectListener
 

N

NetBeanModule - Class in uk.ac.ed.ebrainbuilder
 
NetBeanModule() - Constructor for class uk.ac.ed.ebrainbuilder.NetBeanModule
 
NetBeanModule(File) - Constructor for class uk.ac.ed.ebrainbuilder.NetBeanModule
 
NetBeanModuleController - Class in uk.ac.ed.ebrainbuilder
 
NetBeanModuleController(Model, NetBeanModuleView) - Constructor for class uk.ac.ed.ebrainbuilder.NetBeanModuleController
 
NetBeanModuleView - Class in uk.ac.ed.ebrainbuilder
 
NetBeanModuleView() - Constructor for class uk.ac.ed.ebrainbuilder.NetBeanModuleView
 
NetBeanModuleView(Model) - Constructor for class uk.ac.ed.ebrainbuilder.NetBeanModuleView
 
NETBEANS_MODULE_VIEW - Static variable in class uk.ac.ed.ebrainbuilder.View
 
newProject() - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 

O

openFile(File) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
openMorphologyList(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
openProject(File) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
origin_listeners - Variable in class uk.ac.ed.ebrainbuilder.Model
 

P

performAction() - Method in class uk.ac.ed.ebrainbuilder.netbeans.LaunchAction
 
planes_geometry - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
planes_object - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
preferredID() - Method in class uk.ac.ed.ebrainbuilder.NetBeanModuleView
 
project - Variable in class uk.ac.ed.ebrainbuilder.Model
 
project_handler - Variable in class uk.ac.ed.ebrainbuilder.Model
 
project_listeners - Variable in class uk.ac.ed.ebrainbuilder.Model.Project
 
ProjectHandler - Class in uk.ac.ed.ebrainbuilder
 
ProjectHandler() - Constructor for class uk.ac.ed.ebrainbuilder.ProjectHandler
 
properties_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
PropertiesController - Class in uk.ac.ed.ebrainbuilder
 
PropertiesController(Model, PropertiesView) - Constructor for class uk.ac.ed.ebrainbuilder.PropertiesController
 
PropertiesView - Class in uk.ac.ed.ebrainbuilder
 
PropertiesView(Model) - Constructor for class uk.ac.ed.ebrainbuilder.PropertiesView
 

R

removeListeners(MorphMLHandler) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(MorphologyData) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(AffineWarpDataStructure) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(AffineWarpPoint) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(Morphology) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(Cell) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(Feature) - Method in class uk.ac.ed.ebrainbuilder.Java3DView
 
removeListeners(MorphMLHandler) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
removeListeners(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
removeListeners(MorphologyData) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
removeListeners(Morphology) - Method in class uk.ac.ed.ebrainbuilder.TreeView
 
removeProjectListener(Model.ProjectListener) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
removeSelectionListener(Model.SelectionListener) - Method in class uk.ac.ed.ebrainbuilder.Model
 

S

saveMorphology(Morphology) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
saveMorphologyData(MorphologyData) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
saveMorphologyList(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
saveProject(File) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
selected_object - Variable in class uk.ac.ed.ebrainbuilder.Model
 
selectedObjectChanged(Model.SelectionEvent) - Method in class uk.ac.ed.ebrainbuilder.Model.SelectionAdapter
 
selectedObjectChanged(Model.SelectionEvent) - Method in interface uk.ac.ed.ebrainbuilder.Model.SelectionListener
 
selectFileToOpen() - Static method in class uk.ac.ed.ebrainbuilder.View
 
selection_listeners - Variable in class uk.ac.ed.ebrainbuilder.Model
 
selectProjectToOpen() - Static method in class uk.ac.ed.ebrainbuilder.View
 
selectProjectToSave() - Static method in class uk.ac.ed.ebrainbuilder.View
 
setMorphologyList(MorphologyList) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
setSelectedObject(Object) - Method in class uk.ac.ed.ebrainbuilder.Model
 
StandAlone - Class in uk.ac.ed.ebrainbuilder
The E-Brain Builder is a graphical tool for viewing and manipulating multiple reconstructed neurons.
StandAlone() - Constructor for class uk.ac.ed.ebrainbuilder.StandAlone
 
StandAlone(File) - Constructor for class uk.ac.ed.ebrainbuilder.StandAlone
 
STANDALONE_VIEW - Static variable in class uk.ac.ed.ebrainbuilder.View
 
SwingController - Class in uk.ac.ed.ebrainbuilder
 
SwingController(Model, SwingView) - Constructor for class uk.ac.ed.ebrainbuilder.SwingController
 
SwingView - Class in uk.ac.ed.ebrainbuilder
 
SwingView(Model) - Constructor for class uk.ac.ed.ebrainbuilder.SwingView
 

T

ToolbarController - Class in uk.ac.ed.ebrainbuilder
 
ToolbarController(Model, ToolbarView) - Constructor for class uk.ac.ed.ebrainbuilder.ToolbarController
 
ToolbarView - Class in uk.ac.ed.ebrainbuilder
 
ToolbarView(Model) - Constructor for class uk.ac.ed.ebrainbuilder.ToolbarView
 
transformMorphology(Morphology, Matrix4d) - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 
TreeController - Class in uk.ac.ed.ebrainbuilder
 
TreeController(Model, TreeView) - Constructor for class uk.ac.ed.ebrainbuilder.TreeController
 
TreeView - Class in uk.ac.ed.ebrainbuilder
 
TreeView(Model) - Constructor for class uk.ac.ed.ebrainbuilder.TreeView
 

U

uk.ac.ed.ebrainbuilder - package uk.ac.ed.ebrainbuilder
 
uk.ac.ed.ebrainbuilder.netbeans - package uk.ac.ed.ebrainbuilder.netbeans
 
upload() - Method in class uk.ac.ed.ebrainbuilder.Model.Project
 

V

View - Class in uk.ac.ed.ebrainbuilder
 
View(Model, int) - Constructor for class uk.ac.ed.ebrainbuilder.View
 

W

warp_point_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 
warp_points_listener - Variable in class uk.ac.ed.ebrainbuilder.Java3DView
 

A C D E F G I J L M N O P R S T U V W