A B C D E F G H I J L M N O P R S T U V W

A

add(int) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

add(Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

addEdge(UndirectedGraph.Vertex<Value>, UndirectedGraph.Vertex<Value>, double) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

addEdge(Value, Value, double) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

addEdge(UndirectedGraph.Edge) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Vertex

addListeners(Morphology) - Method in class uk.ac.ed.paxinos3d.View

addModelListener(Model.ModelListener) - Method in class uk.ac.ed.paxinos3d.Model

addNode(MinimalSpanningTree.Node) - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree.Node

addTriangle(Point3d, Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

addTriangle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

addTriangle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

addVertex(Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

addVertex(Value) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

atlas_files - Variable in class uk.ac.ed.paxinos3d.Model

atlasFilesChanged(Model.ModelEvent) - Method in class uk.ac.ed.paxinos3d.Model.ModelAdapter

atlasFilesChanged(Model.ModelEvent) - Method in interface uk.ac.ed.paxinos3d.Model.ModelListener

B

BezierCurve - Class in uk.ac.ed.vecmath

User: nix Date: 31-Mar-2005 Time: 13:39:53 To change this template use Options | File Templates.

BezierCurve(int, int, int, int, int, int, int, int) - Constructor for class uk.ac.ed.vecmath.BezierCurve

BRIGHTNESS_FIDDLE_FACTOR - Static variable in class uk.ac.ed.svg_handler.SVGHandler

BSPTree - Class in uk.ac.ed.computational_geometry.util

User: nix Date: 09-Feb-2005 Time: 16:00:48 To change this template use Options | File Templates.

BSPTree(List<Point3d>) - Constructor for class uk.ac.ed.computational_geometry.util.BSPTree

BSPTree.BSPTreeNode - Class in uk.ac.ed.computational_geometry.util

BSPTree.BSPTreeNode() - Constructor for class uk.ac.ed.computational_geometry.util.BSPTree.BSPTreeNode

BSPTree.Plane - Enum in uk.ac.ed.computational_geometry.util

BSPTree.Range - Enum in uk.ac.ed.computational_geometry.util

BSPTree.Sort - Class in uk.ac.ed.computational_geometry.util

BSPTree.Sort(BSPTree.Plane) - Constructor for class uk.ac.ed.computational_geometry.util.BSPTree.Sort

buildAfferentConnectivityURL(String) - Static method in class uk.ac.ed.cocomac_handler.CoCoMacHandler

buildBrainSiteInfoURL(String) - Static method in class uk.ac.ed.cocomac_handler.CoCoMacHandler

buildCycle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

buildEfferentConnectivityURL(String) - Static method in class uk.ac.ed.cocomac_handler.CoCoMacHandler

buildManifold(Feature) - Static method in class uk.ac.ed.morphml_handler.MarchingCubesAdaptor

buildManifolds(Morphology) - Method in class uk.ac.ed.paxinos3d.Model

buildMapInfoURL() - Static method in class uk.ac.ed.cocomac_handler.CoCoMacHandler

buildMappingURL(String) - Static method in class uk.ac.ed.cocomac_handler.CoCoMacHandler

buildMinimalSpanningTree(List<Plane3d>, UndirectedGraph) - Method in class uk.ac.ed.computational_geometry.algorithm.Hoppe

buildRiemannianGraph(List<Plane3d>) - Method in class uk.ac.ed.computational_geometry.algorithm.Hoppe

buildTangetPlane(Point3d, BSPTree) - Method in class uk.ac.ed.computational_geometry.algorithm.Hoppe

buildTangetPlanes(List<Point3d>) - Method in class uk.ac.ed.computational_geometry.algorithm.Hoppe

buildTree(List<Point3d>, BSPTree.Plane) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

buildUsingKruskalsAlgorithm() - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

buildUsingPrimsAlgorithm(Value) - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

C

calculateType() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

canDecimate(Mesh.Vertex, List<Mesh.Triangle>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

cocomac_address - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

CoCoMacHandler - Class in uk.ac.ed.cocomac_handler

User: nix Date: 26-Jul-2005 Time: 14:39:15 To change this template use Options | File Templates.

CoCoMacHandler() - Constructor for class uk.ac.ed.cocomac_handler.CoCoMacHandler

compare(BSPTree.BSPTreeNode, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

compare(Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree.Sort

compareTo(UndirectedGraph.Edge) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

compareX(Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree.Sort

compareY(Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree.Sort

compareZ(Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree.Sort

containsVertex(Cube.Vertex) - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

containsVertex(Cube.Vertex) - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

CONTOURS - Static variable in class uk.ac.ed.svg_handler.SVGHandler

Controller - Class in uk.ac.ed.paxinos3d

User: nix Date: 29-Jun-2005 Time: 19:04:41 To change this template use Options | File Templates.

Controller(Model, View) - Constructor for class uk.ac.ed.paxinos3d.Controller

Cube - Class in uk.ac.ed.computational_geometry.algorithm.marching_cubes

User: nix Date: 11-Aug-2005 Time: 14:57:50 To change this template use Options | File Templates.

Cube(MarchingCubes, int, int, int) - Constructor for class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

cube - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

Cube.Edge - Enum in uk.ac.ed.computational_geometry.algorithm.marching_cubes

Cube.Face - Enum in uk.ac.ed.computational_geometry.algorithm.marching_cubes

Cube.Type - Enum in uk.ac.ed.computational_geometry.algorithm.marching_cubes

Cube.Vertex - Enum in uk.ac.ed.computational_geometry.algorithm.marching_cubes

cube_size - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

cubes_mapping - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

current_step - Variable in class uk.ac.ed.paxinos3d.Model.TaskStatus

current_x - Variable in class uk.ac.ed.svg_handler.SVGHandler

current_y - Variable in class uk.ac.ed.svg_handler.SVGHandler

D

decimate(Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

decimate(Mesh.Vertex, List<Mesh.Triangle>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

DEFAULT_CUBE_SIZE - Static variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

DEFAULT_DISTANCE_TO_AVERAGE_PLANE - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

DEFAULT_DISTANCE_TO_EDGE - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

DEFAULT_FEATURE_ANGLE - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

DEFAULT_REDUECTION - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.SchroederMeshOptimisation

DEFAULT_TANGENT_PLANE_RADIUS - Static variable in class uk.ac.ed.computational_geometry.algorithm.Hoppe

DelaunayTriangulation - Class in uk.ac.ed.computational_geometry.algorithm

User: nix Date: 03-Feb-2005 Time: 13:54:52 To change this template use Options | File Templates.

DelaunayTriangulation() - Constructor for class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation

DelaunayTriangulation.Triangle - Class in uk.ac.ed.computational_geometry.algorithm

DelaunayTriangulation.Triangle(int, int, int) - Constructor for class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation.Triangle

depth - Variable in class uk.ac.ed.svg_handler.SVGHandler

description - Variable in class uk.ac.ed.paxinos3d.Model.TaskStatus

deselected - Variable in class uk.ac.ed.paxinos3d.Model.ModelEvent

display_max - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

distance_to_average_plane - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

distance_to_edge - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

distance_to_origin - Variable in class uk.ac.ed.vecmath.Plane3d

E

edge - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

edges - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph

edges - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Vertex

end_point - Variable in class uk.ac.ed.vecmath.LineSegment3d

endTask(String) - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

EPSILON - Static variable in class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation

EPSILON - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

equals(Object) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

equals(Object) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

equals(Object) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

ext - Static variable in class uk.ac.ed.paxinos_handler.PaxinosHandler

ext - Static variable in class uk.ac.ed.svg_handler.SVGHandler

F

feature_angle - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

feature_map - Variable in class uk.ac.ed.svg_handler.SVGHandler

files - Variable in class uk.ac.ed.paxinos3d.Model.ModelEvent

FILL_TYPE - Static variable in class uk.ac.ed.paxinos3d.View

finalize() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

findPointsInRange(Point3d, double) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

findPointsInRange(Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

findPointsInRange(BSPTree.BSPTreeNode, Point3d, Point3d, List<Point3d>) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

fireAtlasFilesChanged(File[], File[]) - Method in class uk.ac.ed.paxinos3d.Model

fireMorphologyChanged(Morphology, Morphology) - Method in class uk.ac.ed.paxinos3d.Model

firePaxinoStructureFileChanged(File, File) - Method in class uk.ac.ed.paxinos3d.Model

fireSelectedChanged(Object, Object) - Method in class uk.ac.ed.paxinos3d.Model

fireStatusChanged() - Method in class uk.ac.ed.paxinos3d.Model

G

getAcronym(Color) - Method in class uk.ac.ed.paxinos_handler.PaxinosHandler

getAdjacentCube(Cube.Face) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

getAdjacentTriangle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

getArea() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

getAspectRatio(Plane3d, LineSegment3d, List<Mesh.Vertex>, Plane3d) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getAtlasFiles() - Method in class uk.ac.ed.paxinos3d.Model

getAveragePlane() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getAveragePlane() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getCentre() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

getCentreOfMass(Feature) - Method in class uk.ac.ed.paxinos3d.Model

getCentrePoint(Cube.Edge) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

getCentroid(List<Point3d>) - Static method in class uk.ac.ed.computational_geometry.algorithm.PrincipalComponentAnalysis

getCommonEdge(Mesh.Triangle, Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getCommonVertex(Mesh.CycleOfTriangles.Edge, Mesh.CycleOfTriangles.Edge) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getCovaianceMatrix(List<Point3d>) - Static method in class uk.ac.ed.computational_geometry.algorithm.PrincipalComponentAnalysis

getCube(Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getCube(int, int, int) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getCube() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

getCubes(List<Point3d>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getCubeSize() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getCurrentStep() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getCycle() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getCycleOfTriangles() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getDescription() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getDistanceToAveragePlane() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getDistanceToAveragePlane() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getDistanceToEdge() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getDistanceToInteriorEdge() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getDistanceToOrigin() - Method in class uk.ac.ed.vecmath.Plane3d

getDistanceToPoint(Point3d) - Method in class uk.ac.ed.vecmath.LineSegment3d

getDistanceToPoint(Point3d) - Method in class uk.ac.ed.vecmath.Plane3d

getEdge(int) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

getEdge() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

getEdge(Mesh.Vertex, Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getEdgeId(Mesh.CycleOfTriangles.Edge) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getEdges() - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

getEdges() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

getEdges() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Vertex

getEdgesClockwise() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

getEigenValuesVectors(Matrix3d, double[], Matrix3d) - Static method in class uk.ac.ed.computational_geometry.algorithm.Jacobi

getEndPoint() - Method in class uk.ac.ed.vecmath.LineSegment3d

getEndPoints() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

getEngine(Vector3d, MarchingCubes.ScalarField) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getEquivalentEdge() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

getEquivalentEdgeId(Mesh.CycleOfTriangles.Edge) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getFace(int) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

getFeatureAngle() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getFeatureEdges() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getFileFilter() - Static method in class uk.ac.ed.paxinos_handler.PaxinosHandler

getFileFilter() - Static method in class uk.ac.ed.svg_handler.SVGHandler

getFiles() - Method in class uk.ac.ed.paxinos3d.Model.ModelEvent

getHalfSpaceForPoint(Point3d) - Method in class uk.ac.ed.vecmath.Plane3d

getInstance() - Static method in class uk.ac.ed.paxinos3d.Previewer

Returns the previewer instance.

getInteriorEdge() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getInternalCubes(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getIntersection(Cube, Cube.Edge) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

getIntersectionPoint() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

getIntersectionsPairs(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

getLastMessage() - Method in class uk.ac.ed.paxinos3d.Previewer

Returns the last message.

getLength() - Method in class uk.ac.ed.vecmath.LineSegment3d

getLineSegment() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

getManifold(List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.LorensenMarchingCubes

getManifold(List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

getManifold(HashMap<WyvillMarchingCubes.Intersection, WyvillMarchingCubes.Intersection[]>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

getManifoldLorensen(List<Cube>, MarchingCubes.ScalarField) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getManifoldLorensen(Vector3d, MarchingCubes.ScalarField, List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getManifoldLorensen(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getManifoldWyvill(List<Cube>, MarchingCubes.ScalarField) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getManifoldWyvill(Vector3d, MarchingCubes.ScalarField, List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getManifoldWyvill(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getMask() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

getMask() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

getMask() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Vertex

getMesh(List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.LorensenMarchingCubes

getMorphology() - Method in class uk.ac.ed.paxinos3d.Model

getMorphology() - Method in class uk.ac.ed.paxinos3d.Model.ModelEvent

getName() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getName(Color) - Method in class uk.ac.ed.paxinos_handler.PaxinosHandler

getNodes() - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree.Node

getNormal() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

getNormal() - Method in class uk.ac.ed.vecmath.Plane3d

getNumberOfEdges() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

getNumberOfFeatureEdges() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getNumberOfNodes() - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree.Node

getNumberOfSteps() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getNumberOfVertexes() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

getNumberOfVertexes() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

getNumberOfVertexes() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getNumberOfVertexes() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

getOldFiles() - Method in class uk.ac.ed.paxinos3d.Model.ModelEvent

getOldMorphology() - Method in class uk.ac.ed.paxinos3d.Model.ModelEvent

getOtherVertex(Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

getOuterLoop() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getPaxinoStructureFile() - Method in class uk.ac.ed.paxinos3d.Model

getPercentageCompleted() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getPlatform() - Method in class uk.ac.ed.paxinos3d.Previewer

getPoint(Cube.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

getPoint() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getPoint() - Method in class uk.ac.ed.vecmath.Plane3d

getPoints() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

getPoints() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getPrincipalComponents(List<Point3d>) - Static method in class uk.ac.ed.computational_geometry.algorithm.PrincipalComponentAnalysis

getReorientateAtlasOnSelect() - Method in class uk.ac.ed.paxinos3d.Model

getRoots() - Method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

getScalar_field() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSelected() - Method in class uk.ac.ed.paxinos3d.Model

getSelected() - Method in class uk.ac.ed.paxinos3d.Model.ModelEvent

getSplitLines(List<Mesh.Vertex>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getStartPoint() - Method in class uk.ac.ed.vecmath.LineSegment3d

getSurface(List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.LorensenMarchingCubes

getSurface(List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

getSurfaceCubes(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSurfaceLorensen(List<Cube>, MarchingCubes.ScalarField) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSurfaceLorensen(Vector3d, MarchingCubes.ScalarField, List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSurfaceLorensen(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSurfaceTable() - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.LorensenMarchingCubes

getSurfaceWyvill(List<Cube>, MarchingCubes.ScalarField) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSurfaceWyvill(Vector3d, MarchingCubes.ScalarField, List<Cube>) - Static method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getSurfaceWyvill(List<Cube>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

getTaskProgress() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getTaskStatus() - Method in class uk.ac.ed.paxinos3d.Model

getTaskStatus() - Method in class uk.ac.ed.paxinos3d.Model.ModelEvent

getTaskType() - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

getTraingles() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

getTriangle() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

getTriangle(Mesh.Vertex, Mesh.Vertex, Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getTriangles(HashMap<WyvillMarchingCubes.Intersection, WyvillMarchingCubes.Intersection[]>) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

getTriangles() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getTriangles() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getTriangles() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getType() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

getType() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

getType() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

getType() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

getValue() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Vertex

getVertex(int) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Vertex

getVertex(Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getVertex(Value) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

getVertex1() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

getVertex2() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

getVertexes() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

getVertexes() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

getVertexes() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph

getVertexesClockwise() - Method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

getVertexesId(Mesh.Vertex, Mesh.Vertex, Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

getWeight() - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

getXAt(double) - Method in class uk.ac.ed.vecmath.BezierCurve

getYAt(double) - Method in class uk.ac.ed.vecmath.BezierCurve

graph - Variable in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

H

handleCurveToInstruction(CurveTo) - Method in class uk.ac.ed.svg_handler.SVGHandler

handleLineToInstruction(LineTo) - Method in class uk.ac.ed.svg_handler.SVGHandler

handleMoveToInstruction(MoveTo) - Method in class uk.ac.ed.svg_handler.SVGHandler

hasInteriorEdge() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

Hoppe - Class in uk.ac.ed.computational_geometry.algorithm

Hoppe() - Constructor for class uk.ac.ed.computational_geometry.algorithm.Hoppe

I

id - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

index_x - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

index_y - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

index_z - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

initCellListener() - Method in class uk.ac.ed.paxinos3d.View

initFeatureListener() - Method in class uk.ac.ed.paxinos3d.View

initFrame() - Method in class uk.ac.ed.paxinos3d.View

initialiseContourFeature(Color) - Method in class uk.ac.ed.svg_handler.SVGHandler

initialiseManifoldFeature(Color) - Method in class uk.ac.ed.svg_handler.SVGHandler

initialSurfaceEstimation(List<Point3d>) - Method in class uk.ac.ed.computational_geometry.algorithm.Hoppe

initJava3DPanelEventHandlers() - Method in class uk.ac.ed.paxinos3d.Controller

initJava3DView() - Method in class uk.ac.ed.paxinos3d.View

initLabel() - Method in class uk.ac.ed.paxinos3d.View

initMorphologyListener() - Method in class uk.ac.ed.paxinos3d.View

initOpenDailogEventHandlers() - Method in class uk.ac.ed.paxinos3d.Controller

initOpenDailogEventHandlers() - Method in class uk.ac.ed.paxinos3d.View

initOpenDialog() - Method in class uk.ac.ed.paxinos3d.View

initPropertiesDailogEventHandlers() - Method in class uk.ac.ed.paxinos3d.Controller

initPropertiesDailogEventHandlers() - Method in class uk.ac.ed.paxinos3d.View

initPropertiesDialog() - Method in class uk.ac.ed.paxinos3d.View

initToolbar() - Method in class uk.ac.ed.paxinos3d.View

initToolbarEventHandlers() - Method in class uk.ac.ed.paxinos3d.Controller

initToolbarEventHandlers() - Method in class uk.ac.ed.paxinos3d.View

initTreeEventHandlers() - Method in class uk.ac.ed.paxinos3d.Controller

initTreeView() - Method in class uk.ac.ed.paxinos3d.View

initView() - Method in class uk.ac.ed.paxinos3d.View

initWindowEventHandlers() - Method in class uk.ac.ed.paxinos3d.Controller

inside(Point3d) - Method in interface uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.ScalarField

insides - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

intersection_mapping - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

INTERVAL - Static variable in class uk.ac.ed.svg_handler.SVGHandler

invalidate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

invalidate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

invalidate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

invalidate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

INVERSE_INTERVAL - Static variable in class uk.ac.ed.svg_handler.SVGHandler

isExcelFile(File) - Static method in class uk.ac.ed.paxinos_handler.PaxinosHandler

isInside(Cube.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

isInside(Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

isInsideSurface() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

isOnSurface() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

isOutsideSurface() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

isPointInRange(Point3d, Point3d, Point3d) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

isSExcelFileName(String) - Static method in class uk.ac.ed.paxinos_handler.PaxinosHandler

isSVGFile(File) - Static method in class uk.ac.ed.svg_handler.SVGHandler

isSVGFileName(String) - Static method in class uk.ac.ed.svg_handler.SVGHandler

isValidSplitPlane(Plane3d, LineSegment3d, List<Mesh.Vertex>, List<Mesh.Vertex>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

isVisited() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

items_per_page - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

J

Jacobi - Class in uk.ac.ed.computational_geometry.algorithm

Jacobi() - Constructor for class uk.ac.ed.computational_geometry.algorithm.Jacobi

L

length - Variable in class uk.ac.ed.vecmath.LineSegment3d

LineSegment3d - Class in uk.ac.ed.vecmath

User: nix Date: 16-Aug-2005 Time: 17:59:30 To change this template use Options | File Templates.

LineSegment3d(Point3d, Point3d) - Constructor for class uk.ac.ed.vecmath.LineSegment3d

loadAtlas() - Method in class uk.ac.ed.paxinos3d.Model

LorensenMarchingCubes - Class in uk.ac.ed.computational_geometry.algorithm.marching_cubes

LorensenMarchingCubes() - Constructor for class uk.ac.ed.computational_geometry.algorithm.marching_cubes.LorensenMarchingCubes

M

main(String[]) - Static method in class uk.ac.ed.computational_geometry.algorithm.Jacobi

main(String[]) - Static method in class uk.ac.ed.computational_geometry.util.BSPTree

main(String[]) - Static method in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

Main - Class in uk.ac.ed.paxinos3d

User: nix Date: 11-Jan-2005 Time: 17:11:16 To change this template use Options | File Templates.

Main() - Constructor for class uk.ac.ed.paxinos3d.Main

main(String[]) - Static method in class uk.ac.ed.paxinos3d.Main

MANIFOLD - Static variable in class uk.ac.ed.svg_handler.SVGHandler

manifold - Variable in class uk.ac.ed.svg_handler.SVGHandler

marching_cubes - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

MarchingCubes - Class in uk.ac.ed.computational_geometry.algorithm.marching_cubes

User: nix Date: 08-Apr-2005 Time: 11:59:00 To change this template use Options | File Templates.

MarchingCubes() - Constructor for class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

MarchingCubes.Manifold - Class in uk.ac.ed.computational_geometry.algorithm.marching_cubes

MarchingCubes.Manifold() - Constructor for class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

MarchingCubes.ScalarField - Interface in uk.ac.ed.computational_geometry.algorithm.marching_cubes

MarchingCubesAdaptor - Class in uk.ac.ed.morphml_handler

User: nix Date: 27-Apr-2005 Time: 14:24:14 To change this template use Options | File Templates.

MarchingCubesAdaptor() - Constructor for class uk.ac.ed.morphml_handler.MarchingCubesAdaptor

Mesh - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

User: nix Date: 11-Aug-2005 Time: 15:10:23 To change this template use Options | File Templates.

Mesh() - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

Mesh.CycleOfTriangles - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

Mesh.CycleOfTriangles(Mesh.Vertex) - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

Mesh.CycleOfTriangles.Edge - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

Mesh.CycleOfTriangles.Edge(Mesh.Vertex, Mesh.Vertex) - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

Mesh.CycleOfTriangles.Edge.Type - Enum in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

Mesh.CycleOfTriangles.Type - Enum in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

Mesh.Triangle - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

Mesh.Triangle(Mesh.Vertex, Mesh.Vertex, Mesh.Vertex, String, int) - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

Mesh.Vertex - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

Mesh.Vertex(Point3d, int) - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

Mesh.Vertex.Type - Enum in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

MeshOptimisation - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

User: nix Date: 11-Aug-2005 Time: 15:04:46 To change this template use Options | File Templates.

MeshOptimisation() - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.MeshOptimisation

MinimalSpanningTree<Value> - Class in uk.ac.ed.computational_geometry.util

User: nix Date: 16-Mar-2005 Time: 15:53:50 To change this template use Options | File Templates.

MinimalSpanningTree(UndirectedGraph<Value>, Value) - Constructor for class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

MinimalSpanningTree(UndirectedGraph<Value>) - Constructor for class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

MinimalSpanningTree.Node<Value> - Class in uk.ac.ed.computational_geometry.util

MinimalSpanningTree.Node(Value) - Constructor for class uk.ac.ed.computational_geometry.util.MinimalSpanningTree.Node

MINIMUM_ASPECT_RATIO - Static variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

Model - Class in uk.ac.ed.paxinos3d

User: nix Date: 29-Jun-2005 Time: 19:04:22 To change this template use Options | File Templates.

Model() - Constructor for class uk.ac.ed.paxinos3d.Model

Model.ModelAdapter - Class in uk.ac.ed.paxinos3d

Model.ModelAdapter() - Constructor for class uk.ac.ed.paxinos3d.Model.ModelAdapter

Model.ModelEvent - Class in uk.ac.ed.paxinos3d

Model.ModelEvent(Object, Model.TaskStatus) - Constructor for class uk.ac.ed.paxinos3d.Model.ModelEvent

Model.ModelEvent(Object, File[], File[]) - Constructor for class uk.ac.ed.paxinos3d.Model.ModelEvent

Model.ModelEvent(Object, Morphology, Morphology) - Constructor for class uk.ac.ed.paxinos3d.Model.ModelEvent

Model.ModelEvent(Object, Object, Object) - Constructor for class uk.ac.ed.paxinos3d.Model.ModelEvent

Model.ModelListener - Interface in uk.ac.ed.paxinos3d

Model.TaskProgress - Enum in uk.ac.ed.paxinos3d

Model.TaskStatus - Class in uk.ac.ed.paxinos3d

Model.TaskStatus() - Constructor for class uk.ac.ed.paxinos3d.Model.TaskStatus

Model.TaskType - Enum in uk.ac.ed.paxinos3d

model_listeners - Variable in class uk.ac.ed.paxinos3d.Model

morphml_handler - Variable in class uk.ac.ed.svg_handler.SVGHandler

morphology - Variable in class uk.ac.ed.paxinos3d.Model.ModelEvent

morphology - Variable in class uk.ac.ed.paxinos3d.Model

morphology - Variable in class uk.ac.ed.svg_handler.SVGHandler

morphologyChanged(Model.ModelEvent) - Method in class uk.ac.ed.paxinos3d.Model.ModelAdapter

morphologyChanged(Model.ModelEvent) - Method in interface uk.ac.ed.paxinos3d.Model.ModelListener

N

name - Variable in class uk.ac.ed.paxinos3d.Model.TaskStatus

newTriangle(Mesh.Vertex, Mesh.Vertex, Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

newVertex(Point3d) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

next() - Method in enum uk.ac.ed.computational_geometry.util.BSPTree.Plane

next_point_id - Variable in class uk.ac.ed.svg_handler.SVGHandler

nodes - Variable in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

normal - Variable in class uk.ac.ed.vecmath.Plane3d

number_of_steps - Variable in class uk.ac.ed.paxinos3d.Model.TaskStatus

O

optimizeMesh(Mesh) - Static method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.SchroederMeshOptimisation

optimizeMesh(Mesh, int) - Static method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.SchroederMeshOptimisation

optimizeMeshSchroeder(Mesh) - Static method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.MeshOptimisation

otherVertex(UndirectedGraph.Vertex) - Method in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

output_type - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

P

p1 - Variable in class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation.Triangle

p2 - Variable in class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation.Triangle

p3 - Variable in class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation.Triangle

password - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

paxino_structure_file - Variable in class uk.ac.ed.paxinos3d.Model

paxinos_handler - Variable in class uk.ac.ed.svg_handler.SVGHandler

PaxinosHandler - Class in uk.ac.ed.paxinos_handler

User: nix Date: 13-Jan-2005 Time: 15:28:03 To change this template use Options | File Templates.

PaxinosHandler() - Constructor for class uk.ac.ed.paxinos_handler.PaxinosHandler

PaxinosHandler.PaxinosStructure - Class in uk.ac.ed.paxinos_handler

PaxinosHandler.PaxinosStructure() - Constructor for class uk.ac.ed.paxinos_handler.PaxinosHandler.PaxinosStructure

paxinoStructureFileChanged(Model.ModelEvent) - Method in class uk.ac.ed.paxinos3d.Model.ModelAdapter

paxinoStructureFileChanged(Model.ModelEvent) - Method in interface uk.ac.ed.paxinos3d.Model.ModelListener

pen_up - Variable in class uk.ac.ed.svg_handler.SVGHandler

plane - Variable in class uk.ac.ed.computational_geometry.util.BSPTree.Sort

Plane3d - Class in uk.ac.ed.vecmath

Plane3d(Point3d, Vector3d) - Constructor for class uk.ac.ed.vecmath.Plane3d

Plane3d(Plane3d, LineSegment3d) - Constructor for class uk.ac.ed.vecmath.Plane3d

point - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

point - Variable in class uk.ac.ed.vecmath.Plane3d

point_to_vertex_map - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

points - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

polygon - Variable in class uk.ac.ed.svg_handler.SVGHandler

Previewer - Class in uk.ac.ed.paxinos3d

A simple, static class to display a URL in the system browser.

Previewer() - Constructor for class uk.ac.ed.paxinos3d.Previewer

PrincipalComponentAnalysis - Class in uk.ac.ed.computational_geometry.algorithm

User: nix Date: 03-Mar-2005 Time: 15:35:09 To change this template use Options | File Templates.

PrincipalComponentAnalysis() - Constructor for class uk.ac.ed.computational_geometry.algorithm.PrincipalComponentAnalysis

R

readStream(InputStream) - Method in class uk.ac.ed.paxinos_handler.PaxinosHandler

readStream(InputStream) - Method in class uk.ac.ed.svg_handler.SVGHandler

reloadAtlas() - Method in class uk.ac.ed.paxinos3d.Model

removeListeners(Morphology) - Method in class uk.ac.ed.paxinos3d.View

removeModelListener(Model.ModelListener) - Method in class uk.ac.ed.paxinos3d.Model

removeTriangle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

removeTriangle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

reorientate_atlas_on_select - Variable in class uk.ac.ed.paxinos3d.Model

root - Variable in class uk.ac.ed.computational_geometry.util.BSPTree

roots - Variable in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

S

SATURATION_DAMPENING - Static variable in class uk.ac.ed.svg_handler.SVGHandler

scalar_field - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

SCALE - Static variable in class uk.ac.ed.svg_handler.SVGHandler

SchroederMeshOptimisation - Class in uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

User: nix Date: 11-Aug-2005 Time: 15:05:19 To change this template use Options | File Templates.

SchroederMeshOptimisation() - Constructor for class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.SchroederMeshOptimisation

selected - Variable in class uk.ac.ed.paxinos3d.Model.ModelEvent

selected - Variable in class uk.ac.ed.paxinos3d.Model

selectedChanged(Model.ModelEvent) - Method in class uk.ac.ed.paxinos3d.Model.ModelAdapter

selectedChanged(Model.ModelEvent) - Method in interface uk.ac.ed.paxinos3d.Model.ModelListener

setAtlasDirectory(File) - Method in class uk.ac.ed.paxinos3d.Model

setAtlasFiles(File[]) - Method in class uk.ac.ed.paxinos3d.Model

setCubeSize(double) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

setCubeSize(Vector3d) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

setDepth(double) - Method in class uk.ac.ed.svg_handler.SVGHandler

setDistanceToAveragePlane(double) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

setDistanceToEdge(double) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

setEquivalentEdge(Mesh.CycleOfTriangles.Edge) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

setFeatureAngle(double) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

setMorphology(Morphology) - Method in class uk.ac.ed.paxinos3d.Model

setMorphology(Morphology) - Method in class uk.ac.ed.svg_handler.SVGHandler

setPaxinoStructureFile(File) - Method in class uk.ac.ed.paxinos3d.Model

setReorientateAtlasOnSelect(boolean) - Method in class uk.ac.ed.paxinos3d.Model

setScalarField(MarchingCubes.ScalarField) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

setSelected(Object) - Method in class uk.ac.ed.paxinos3d.Model

setThickness(double) - Method in class uk.ac.ed.svg_handler.SVGHandler

setTriangle(Mesh.Triangle) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

setVisited(boolean) - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

shouldDecimate(Mesh.Vertex) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

show(String) - Static method in class uk.ac.ed.paxinos3d.Previewer

Shows a url.

showCoCoMacAfferentConnectivity() - Method in class uk.ac.ed.paxinos3d.Model

showCoCoMacBrainSiteInfo() - Method in class uk.ac.ed.paxinos3d.Model

showCoCoMacEfferentConnectivity() - Method in class uk.ac.ed.paxinos3d.Model

showCoCoMacMapInfo() - Method in class uk.ac.ed.paxinos3d.Model

showCoCoMacMapping() - Method in class uk.ac.ed.paxinos3d.Model

showURL(String) - Method in class uk.ac.ed.paxinos3d.Previewer

Shows a url.

singleton - Static variable in class uk.ac.ed.paxinos3d.Main

size - Variable in class uk.ac.ed.computational_geometry.util.BSPTree

size() - Method in class uk.ac.ed.computational_geometry.util.BSPTree

size(BSPTree.BSPTreeNode) - Method in class uk.ac.ed.computational_geometry.util.BSPTree

sortEigenValuesVectors(double[], Matrix3d) - Static method in class uk.ac.ed.computational_geometry.algorithm.Jacobi

splitLoop(List<Mesh.Vertex>, LineSegment3d, List<Mesh.Vertex>, List<Mesh.Vertex>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

start_point - Variable in class uk.ac.ed.vecmath.LineSegment3d

startCompoundTask(String, String, int) - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

startSimpleTask(String, String) - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

statusChanged(Model.ModelEvent) - Method in class uk.ac.ed.paxinos3d.Model.ModelAdapter

statusChanged(Model.ModelEvent) - Method in interface uk.ac.ed.paxinos3d.Model.ModelListener

surface_table - Static variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.LorensenMarchingCubes

SVGHandler - Class in uk.ac.ed.svg_handler

SVGHandler(MorphMLHandler, PaxinosHandler) - Constructor for class uk.ac.ed.svg_handler.SVGHandler

T

task_progress - Variable in class uk.ac.ed.paxinos3d.Model.TaskStatus

task_status - Variable in class uk.ac.ed.paxinos3d.Model.ModelEvent

task_status - Variable in class uk.ac.ed.paxinos3d.Model

task_type - Variable in class uk.ac.ed.paxinos3d.Model.TaskStatus

testBSPTree(ArrayList<Point3d>) - Method in class uk.ac.ed.computational_geometry.algorithm.Hoppe

thickness - Variable in class uk.ac.ed.svg_handler.SVGHandler

tool_name - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

toString() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

toString() - Method in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes.Intersection

toString() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

toString() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

toString() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

toString() - Method in class uk.ac.ed.vecmath.LineSegment3d

traingles - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes.Manifold

tree_edges - Variable in class uk.ac.ed.computational_geometry.util.MinimalSpanningTree

triangulate(List<Mesh.Vertex>, Plane3d, List<Mesh.Triangle>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

triangulateCycle(Mesh.CycleOfTriangles, List<Mesh.Triangle>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

triangulateTerrain(List<Point3d>) - Static method in class uk.ac.ed.computational_geometry.algorithm.DelaunayTriangulation

triangulateWithInteriorEdge(List<Mesh.Vertex>, LineSegment3d, Plane3d, List<Mesh.Triangle>) - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

type - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

U

uk.ac.ed.cocomac_handler - package uk.ac.ed.cocomac_handler

uk.ac.ed.computational_geometry.algorithm - package uk.ac.ed.computational_geometry.algorithm

uk.ac.ed.computational_geometry.algorithm.marching_cubes - package uk.ac.ed.computational_geometry.algorithm.marching_cubes

uk.ac.ed.computational_geometry.algorithm.mesh_optimisation - package uk.ac.ed.computational_geometry.algorithm.mesh_optimisation

uk.ac.ed.computational_geometry.util - package uk.ac.ed.computational_geometry.util

uk.ac.ed.morphml_handler - package uk.ac.ed.morphml_handler

uk.ac.ed.paxinos3d - package uk.ac.ed.paxinos3d

uk.ac.ed.paxinos_handler - package uk.ac.ed.paxinos_handler

uk.ac.ed.svg_handler - package uk.ac.ed.svg_handler

uk.ac.ed.vecmath - package uk.ac.ed.vecmath

UndirectedGraph<Value> - Class in uk.ac.ed.computational_geometry.util

User: nix Date: 16-Mar-2005 Time: 11:34:47 To change this template use Options | File Templates.

UndirectedGraph() - Constructor for class uk.ac.ed.computational_geometry.util.UndirectedGraph

UndirectedGraph.Edge<Value> - Class in uk.ac.ed.computational_geometry.util

UndirectedGraph.Edge(UndirectedGraph.Vertex<Value>, UndirectedGraph.Vertex<Value>, double) - Constructor for class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

UndirectedGraph.Vertex<Value> - Class in uk.ac.ed.computational_geometry.util

UndirectedGraph.Vertex(Value) - Constructor for class uk.ac.ed.computational_geometry.util.UndirectedGraph.Vertex

updateCompoundTask(String, int) - Method in class uk.ac.ed.paxinos3d.Model.TaskStatus

username - Static variable in class uk.ac.ed.cocomac_handler.CoCoMacHandler

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validate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge

validate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles

validate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

validate() - Method in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex

value - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Vertex

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Vertex

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.util.BSPTree.Plane

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.computational_geometry.util.BSPTree.Range

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.paxinos3d.Model.TaskProgress

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uk.ac.ed.paxinos3d.Model.TaskType

Returns the enum constant of this type with the specified name.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Edge

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Face

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Type

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube.Vertex

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Edge.Type

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.CycleOfTriangles.Type

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Vertex.Type

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.util.BSPTree.Plane

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.computational_geometry.util.BSPTree.Range

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.paxinos3d.Model.TaskProgress

Returns an array containing the constants of this enum type, in the order they're declared.

values() - Static method in enum uk.ac.ed.paxinos3d.Model.TaskType

Returns an array containing the constants of this enum type, in the order they're declared.

vertex1 - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

vertex1 - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

vertex2 - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

vertex2 - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

vertex3 - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh.Triangle

vertex_mapping - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.MarchingCubes

vertexes - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

vertexes - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph

vertexes_to_triangle_map - Variable in class uk.ac.ed.computational_geometry.algorithm.mesh_optimisation.Mesh

View - Class in uk.ac.ed.paxinos3d

User: nix Date: 29-Jun-2005 Time: 19:04:30 To change this template use Options | File Templates.

View(Model) - Constructor for class uk.ac.ed.paxinos3d.View

visited - Variable in class uk.ac.ed.computational_geometry.algorithm.marching_cubes.Cube

W

weight - Variable in class uk.ac.ed.computational_geometry.util.UndirectedGraph.Edge

WyvillMarchingCubes - Class in uk.ac.ed.computational_geometry.algorithm.marching_cubes

User: nix Date: 29-Apr-2005 Time: 11:54:33 To change this template use Options | File Templates.

WyvillMarchingCubes() - Constructor for class uk.ac.ed.computational_geometry.algorithm.marching_cubes.WyvillMarchingCubes

WyvillMarchingCubes.Intersection - Class in uk.ac.ed.computational_geometry.algorithm.marching_cubes

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